Evidence map›Paper›PMID 29709615›Full record

ArticleJournal of proteomics2018

Common proteomic profiles of induced pluripotent stem cell-derived three-dimensional neurons and brain tissue from Alzheimer patients.

Mei Chen, Han-Kyu Lee, Lauren Moo, Eugene Hanlon, Thor Stein, Weiming Xia

Open access · greenAbstract read
In one paragraph

Article in Journal of proteomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
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  4. Review
  5. Brain organoid protocols and limitations.Frontiers in cellular neuroscience · 2024
    Review
  6. Review
  7. Review
  8. In Vitro 3D Modeling of Neurodegenerative Diseases.Bioengineering (Basel, Switzerland) · 2023
    Review
  9. Article
  10. Article
  11. Review
  12. Review
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  15. Review
  16. Article
  17. The Role of P2X7 Receptor in Alzheimer's Disease.Frontiers in molecular neuroscience · 2020
    Review
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Mei ChenGeriatric Research Education and Clinical Center, Edith Nourse Rogers Memorial Veterans Hospital, Bedford, MA, United States; Department of Environmental Health, Harvard T H Chan School of Public Health, Boston, MA, United States.
Han-Kyu LeeGeriatric Research Education and Clinical Center, Edith Nourse Rogers Memorial Veterans Hospital, Bedford, MA, United States.
Lauren MooGeriatric Research Education and Clinical Center, Edith Nourse Rogers Memorial Veterans Hospital, Bedford, MA, United States.
Eugene HanlonOffice of Research and Development, Edith Nourse Rogers Memorial Veterans Hospital, Bedford, MA, United States.
Thor SteinGeriatric Research Education and Clinical Center, Edith Nourse Rogers Memorial Veterans Hospital, Bedford, MA, United States; Department of Pathology, Boston University School of Medicine, Boston, MA, United States.
Weiming XiaGeriatric Research Education and Clinical Center, Edith Nourse Rogers Memorial Veterans Hospital, Bedford, MA, United States; Department of Pharmacology and Experimental Therapeutics, Boston University School of Medicine, Boston, MA, United States. Electronic address: weiming.xia@va.gov.
Edith Nourse Rogers Memorial Veterans Hospital · USGeriatric Research Education and Clinical Center · US

Funding

Early and late-life metal exposures and Alzheimer's diseaseR01ES024165 · NIEHS · HARVARD SCHOOL OF PUBLIC HEALTH · PI WEISSKOPF, MARC G · 2014 to 2019
$3.3M
Profiling Alzheimer's BiomarkersI01BX003527 · VA · EDITH NOURSE ROGERS MEMORIAL VETERANS HOSPITAL · PI XIA, WEIMING · 2018 to 2021
–
Three dimensional neuronal model for Alzheimer's brainI21BX003807 · VA · EDITH NOURSE ROGERS MEMORIAL VETERANS HOSPITAL · PI XIA, WEIMING · 2018 to 2019
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BLRD VA I01 BX003527BLRD VA I21 BX002215BLRD VA I21 BX003807NIEHS NIH HHS R01 ES024165
6 · The paper itself

Abstract

We established a unique platform for proteomic analysis of cultured three-dimensional (3D) neurons and brain tissue from Alzheimer's disease (AD) patients. We collected peripheral blood mononuclear cells (PBMC), converted PBMC to induced pluripotent stem cell (iPSC) lines, and differentiated the iPSC into human 3D neuro-spheroids. The postmortem brain tissue from the superior frontal cortex, inferior frontal cortex and cerebellum area of the AD patients was compared to the same regions from the control subjects. Proteomic analysis of 3D neuro-spheroids derived from AD subjects revealed the alteration of a number of proteins involved in axon growth, mitochondrial function, and antioxidant defense. Similar analysis of post-mortem AD brain tissue revealed significant alteration in proteins involved in oxidative stress, neuro-inflammation, along with proteins related to axonal injury. These results clearly indicate that the dysfunction of 3D neurons from AD patients in our in vitro environment is comparable to the post-mortem AD brain tissue in vivo. In conclusion, our study revealed a number of candidate proteins that have important implications in AD pathogenesis and supports the notion that the iPSC-derived 3D neuronal system functions as a model to examine novel aspects of AD pathology. SIGNIFICANCE: In this study, we present a unique platform for proteomic analysis of induced pluripotent stem cell-derived three dimensional (3D) neurons and compare the results to those from three regions of post-mortem brain tissue from Alzheimer's disease patients and normal control subjects. Our results show that the dysfunction of 3D neurons from AD patients in our in vitro environment is comparable to the post-mortem AD brain tissue in vivo. Our results revealed several candidate proteins that have important implications in AD pathogenesis.

Indexed as

Alzheimer DiseaseAxonsBrainBrain ChemistryCase-Control StudiesCells, CulturedHumansInduced Pluripotent Stem CellsInflammationNeuronsOxidative StressProteinsProteomicsProteins3DAlzheimerBioinformaticiPSCNeuro-spheroidProteomics

Identifiers

PMID29709615
PMCPMC7457321
OpenAlexW2799389402

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.