Evidence map›Paper›PMID 29709563›Full record

ArticleAntiviral research2018

Characterization and structure-activity relationship analysis of a class of antiviral compounds that directly bind dengue virus capsid protein and are incorporated into virions.

Jessica L Smith, Kayla Sheridan, Christopher J Parkins, Lisa Frueh, Adriana L Jemison, Kathleya Strode, Geoffrey Dow, Aaron Nilsen, Alec J Hirsch

Abstract read
In one paragraph

Article in Antiviral research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Review
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  6. Exploring the Targets of Dengue Virus and Designs of Potential Inhibitors.Combinatorial chemistry & high throughput screening · 2024
    Article
  7. Review
  8. Review
  9. Review
  10. Seeking heterocyclic scaffolds as antivirals against dengue virus.European journal of medicinal chemistry · 2022
    Review
  11. Review
  12. Review
  13. Review
  14. Article
  15. A cocrystal structure of dengue capsid protein in complex of inhibitor.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  16. Review
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jessica L SmithVaccine and Gene Therapy Institute, Oregon Health & Science University, Beaverton, OR, USA.
Kayla SheridanDepartment of Chemistry, Reed College, Portland, OR, USA.
Christopher J ParkinsVaccine and Gene Therapy Institute, Oregon Health & Science University, Beaverton, OR, USA.
Lisa FruehDepartment of Chemistry, Reed College, Portland, OR, USA.
Adriana L JemisonDepartment of Chemistry, Reed College, Portland, OR, USA.
Kathleya StrodeDepartment of Chemistry, Reed College, Portland, OR, USA.
Geoffrey Dow60° Pharmaceuticals LLC, Washington, DC, USA.
Aaron NilsenMedicinal Chemistry Core, Oregon Health & Science University, Portland, OR, USA.
Alec J HirschVaccine and Gene Therapy Institute, Oregon Health & Science University, Beaverton, OR, USA. Electronic address: hirschal@ohsu.edu.

Funding

The Burden of Chikungunya and Dengue Infection in KenyaU54AI081680 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI RYMAN, KATHERINE D · 2009 to 2013
$40.4M
Project 4 - Influenza - UABU19AI142759 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI WHITLEY, RICHARD J. · 2019 to 2023
$37.5M
Screening CoreU19AI109680 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI WHITLEY, RICHARD J. · 2014 to 2018
$34.9M
The Administrative CoreP01AI127335 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI Patrizia Caposio · 2017 to 2026
$24.6M
NIAID NIH HHS P01 AI127335NIAID NIH HHS U19 AI109680NIAID NIH HHS U19 AI142759NIAID NIH HHS U54 AI081680
6 · The paper itself

Abstract

Dengue viruses (DENV) are endemic pathogens of tropical and subtropical regions and cause significant morbidity and mortality worldwide. Although a partially effective vaccine is in use in several countries in which DENV are endemic, no antiviral therapeutics are approved for combating DENV-associated disease. Herein, we report the characterization of novel small molecule inhibitors of DENV replication, VGTI-A3 and VGTI-A3-03, as well as structure-activity relationship analysis of the molecules using a panel of chemical analogs. VGTI-A3 and VGTI-A3-03 are highly virus-specific, with greatest activity against DENV serotype 2. Further analysis revealed that treatment of infected cells with VGTI-A3-03 does not inhibit viral RNA replication or secretion of viral particles. Rather, the infectivity of secreted particles from A3-03 treated cells is significantly diminished compared to particles secreted from control cells. Elicitation of VGTI-A3-03-resistant mutants demonstrated a clear binding pocket in the capsid molecule at the dimerization interface. Additionally, we show that VGTI-A3-03 is incorporated into virus particles released from infected cells. In summary, these data provide detailed analysis of a potentially useful class of anti-DENV inhibitors and further identify a region of the viral capsid protein as a druggable target for other therapeutic approaches.

Indexed as

Antiviral AgentsCapsidCapsid ProteinsDengueDengue VirusHEK293 CellsHumansMutagenesisProtein BindingRNA, ViralStructure-Activity RelationshipVirionVirus ReplicationAntiviral AgentsCapsid ProteinsRNA, Viral

Identifiers

PMID29709563
PMCPMC9627977

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.