Evidence map›Paper›PMID 29709000›Full record

ArticlePloS one2018

Control of Pem protein level by localized maternal factors for transcriptional regulation in the germline of the ascidian, Halocynthia roretzi.

Kaori Miyaoku, Ayaki Nakamoto, Hiroki Nishida, Gaku Kumano

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Kaori MiyaokuAsamushi Research Center for Marine Biology, Graduate School of Life Sciences, Tohoku University, Asamushi, Aomori, Japan.ORCID 0000-0003-3692-358X
Ayaki NakamotoAsamushi Research Center for Marine Biology, Graduate School of Life Sciences, Tohoku University, Asamushi, Aomori, Japan.
Hiroki NishidaDepartment of Biological Sciences, Graduate School of Science, Osaka University, Machikaneyama-cho, Toyonaka, Osaka, Japan.
Gaku KumanoAsamushi Research Center for Marine Biology, Graduate School of Life Sciences, Tohoku University, Asamushi, Aomori, Japan.
Tohoku University · JPThe University of Osaka · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Localized maternal mRNAs play important roles in embryogenesis, e.g. the establishment of embryonic axes and the developmental cell fate specification, in various animal species. In ascidians, a group of maternal mRNAs, called postplasmic/PEM RNAs, is localized to a subcellular structure, called the Centrosome-Attracting Body (CAB), which contains the ascidian germ plasm, and is inherited by the germline cells during embryogenesis. Posterior end mark (Pem), a postplasmic/PEM RNAs member, represses somatic gene expression in the germline during cleavage stages by inhibition of RNA polymerase II activity. However, the functions of other postplasmic/ PEM RNAs members in germline formation are largely unknown. In this study, we analyzed the functions of two postplasmic/PEM RNAs, Popk-1 and Zf-1, in transcriptional regulation in the germline cells. We show that Popk-1 contributes to transcriptional quiescence by controlling the size of the CAB and amount of Pem protein translated at the CAB. Our studies also indicated that zygotic expression of a germline gene starts around the onset of gastrulation and that the decrease of Pem protein is necessary and sufficient for the zygotic germline gene expression. Finally, further studies showed that the decrease of the Pem protein level is facilitated by Zf-1. Taken together, we propose that postplasmic/PEM RNAs such as Popk-1 and Zf-1 control the protein level of the transcriptional repressor Pem and regulate its transcriptional state in the ascidian germline.

Indexed as

Adenosine DiphosphateAdenosine TriphosphateAnimalsCentrosomeDactinomycinDNA-Binding ProteinsDNA-Directed RNA PolymerasesGene Expression Regulation, DevelopmentalGerm CellsIn Situ HybridizationPhylogenyRNA, Messenger, StoredTranscription, GeneticUrochordataZygoteAdenosine DiphosphateAdenosine TriphosphateDactinomycinDNA-Binding ProteinsDNA-Directed RNA PolymerasesRNA, Messenger, Stored

Identifiers

PMID29709000
PMCPMC5927453
OpenAlexW2801929874

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.