Evidence map›Paper›PMID 29708974›Full record

ArticlePLoS computational biology2018

Quantitative analysis reveals crosstalk mechanisms of heat shock-induced attenuation of NF-κB signaling at the single cell level.

Małgorzata Kardyńska, Anna Paszek, Jarosław Śmieja, David Spiller, Wiesława Widłak, Michael R H White, Pawel Paszek, Marek Kimmel

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Małgorzata KardyńskaSystems Engineering Group, Silesian University of Technology, Gliwice, Poland.
Anna PaszekSystems Engineering Group, Silesian University of Technology, Gliwice, Poland.
Jarosław ŚmiejaSystems Engineering Group, Silesian University of Technology, Gliwice, Poland.ORCID 0000-0002-6120-4424
David SpillerSystem Microscopy Centre, School of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester Academic Health Science Centre, Manchester, United Kingdom.
Wiesława WidłakMaria Skłodowska-Curie Institute-Oncology Center, Gliwice Branch, Gliwice, Poland.
Michael R H WhiteSystem Microscopy Centre, School of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester Academic Health Science Centre, Manchester, United Kingdom.
Pawel PaszekSystem Microscopy Centre, School of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester Academic Health Science Centre, Manchester, United Kingdom.ORCID 0000-0002-0363-0716
Marek KimmelSystems Engineering Group, Silesian University of Technology, Gliwice, Poland.
Silesian University of Technology · PLManchester Academic Health Science Centre · GBThe Maria Sklodowska-Curie National Research Institute of Oncology · PL

Funding

Biotechnology and Biological Sciences Research Council BB/I017976/1Biotechnology and Biological Sciences Research Council BB/K003097/1
6 · The paper itself

Abstract

Elevated temperature induces the heat shock (HS) response, which modulates cell proliferation, apoptosis, the immune and inflammatory responses. However, specific mechanisms linking the HS response pathways to major cellular signaling systems are not fully understood. Here we used integrated computational and experimental approaches to quantitatively analyze the crosstalk mechanisms between the HS-response and a master regulator of inflammation, cell proliferation, and apoptosis the Nuclear Factor κB (NF-κB) system. We found that populations of human osteosarcoma cells, exposed to a clinically relevant 43°C HS had an attenuated NF-κB p65 response to Tumor Necrosis Factor α (TNFα) treatment. The degree of inhibition of the NF-κB response depended on the HS exposure time. Mathematical modeling of single cells indicated that individual crosstalk mechanisms differentially encode HS-mediated NF-κB responses while being consistent with the observed population-level responses. In particular "all-or-nothing" encoding mechanisms were involved in the HS-dependent regulation of the IKK activity and IκBα phosphorylation, while others involving transport were "analogue". In order to discriminate between these mechanisms, we used live-cell imaging of nuclear translocations of the NF-κB p65 subunit. The single cell responses exhibited "all-or-nothing" encoding. While most cells did not respond to TNFα stimulation after a 60 min HS, 27% showed responses similar to those not receiving HS. We further demonstrated experimentally and theoretically that the predicted inhibition of IKK activity was consistent with the observed HS-dependent depletion of the IKKα and IKKβ subunits in whole cell lysates. However, a combination of "all-or-nothing" crosstalk mechanisms was required to completely recapitulate the single cell data. We postulate therefore that the heterogeneity of the single cell responses might be explained by the cell-intrinsic variability of HS-modulated IKK signaling. In summary, we show that high temperature modulates NF-κB responses in single cells in a complex and unintuitive manner, which needs to be considered in hyperthermia-based treatment strategies.

Indexed as

Models, BiologicalCell LineComputational BiologyComputer SimulationGreen Fluorescent ProteinsHeat-Shock ResponseHumansI-kappa B KinaseNF-kappa BRecombinant Fusion ProteinsSignal TransductionSingle-Cell AnalysisTranscription Factor RelATumor Necrosis Factor-alphaenhanced green fluorescent proteinGreen Fluorescent ProteinsI-kappa B KinaseNF-kappa BRecombinant Fusion ProteinsRELA protein, humanTranscription Factor RelATumor Necrosis Factor-alpha

Identifiers

PMID29708974
PMCPMC5945226
OpenAlexW2801941112

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.