Evidence map›Paper›PMID 29708513›Full record

ArticleThe Journal of clinical investigation2018

DNA methyltransferase expression in triple-negative breast cancer predicts sensitivity to decitabine.

Jia Yu, Bo Qin, Ann M Moyer, Somaira Nowsheen, Tongzheng Liu, Sisi Qin, Yongxian Zhuang, Duan Liu, Shijia W Lu, Krishna R Kalari and 12 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 129 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
129citing papers in PubMed, 2 pooled it
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

129 citing papers in PubMed, 2 syntheses or guidelines pooled it, 207 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Review
  6. Review
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Review
  20. Article

69 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 6 institutions in 3 countries.

Jia YuDepartment of Molecular Pharmacology and Experimental Therapeutics.
Bo QinDepartment of Molecular Pharmacology and Experimental Therapeutics.
Ann M MoyerDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota, USA.
Somaira NowsheenDepartment of Oncology, and.
Tongzheng LiuDepartment of Oncology, and.
Sisi QinDepartment of Molecular Pharmacology and Experimental Therapeutics.
Yongxian ZhuangDepartment of Molecular Pharmacology and Experimental Therapeutics.
Duan LiuDepartment of Molecular Pharmacology and Experimental Therapeutics.
Shijia W LuDepartment of Molecular Pharmacology and Experimental Therapeutics.
Krishna R KalariDepartment of Health Sciences Research, Mayo Clinic, Rochester, Minnesota, USA.
Daniel W VisscherDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota, USA.
John A CoplandDepartment of Cancer Biology.
Sarah A McLaughlinDepartment of Surgery, and.
Alvaro Moreno-AspitiaDepartment of Hematology/Oncology, Mayo Clinic, Jacksonville, Florida, USA.
Donald W NorthfeltDepartment of Hematology/Oncology, and.
Richard J GrayDepartment of Surgery, Mayo Clinic, Scottsdale, Arizona, USA.
Zhenkun LouDepartment of Oncology, and.
Vera J SumanDepartment of Health Sciences Research, Mayo Clinic, Rochester, Minnesota, USA.
Richard WeinshilboumDepartment of Molecular Pharmacology and Experimental Therapeutics.
Judy C BougheyDepartment of Surgery, Mayo Clinic, Rochester, Minnesota, USA.
Matthew P GoetzDepartment of Molecular Pharmacology and Experimental Therapeutics.
Liewei WangDepartment of Molecular Pharmacology and Experimental Therapeutics.
Mayo Clinic · USMayo Clinic in Florida · USMayo Clinic in Arizona · USJinan University · CNPalmetto Hematology Oncology · USThe University of Sydney · AU

Funding

Women's Cancer ProgramP30CA015083 · NCI · MAYO CLINIC ROCHESTER · PI AKHILESH PANDEY · 1985 to 2026
$151.3M
Mayo Clinic Center for Clinical and Translational Science (CCaTS UL1 Supplement - Dr. Timothy Curry)UL1TR002377 · NCATS · MAYO CLINIC ROCHESTER · PI VESNA D GAROVIC · 2017 to 2026
$78.4M
The Role of CHFR in Tumorigenesis and Paclitaxel-Sensitivity in Breast CancerP50CA116201 · NCI · MAYO CLINIC ROCHESTER · PI Fergus Joseph Couch · 2005 to 2026
$49.9M
Pharmacogenetics of Phase II Drug Metabolizing EnzymesU19GM061388 · NIGMS · MAYO CLINIC ROCHESTER · PI WEINSHILBOUM, RICHARD M. · 2010 to 2014
$15.8M
PHARMACOGENETICS OF PHASE II DRUG METABOLIZING ENZYMESU01GM061388 · NIGMS · MAYO CLINIC ROCHESTER · PI WEINSHILBOUM, RICHARD M. · 2000 to 2009
$15.7M
TRAINING GRANT IN CLINICAL PHARMACOLOGYT32GM008685 · NIGMS · MAYO CLINIC ROCHESTER · PI Liewei Wang · 1998 to 2026
$8.2M
INHERITED VARIATIONS IN DRUG-METABOLIZING ENZYMESR01GM028157 · NIGMS · MAYO CLINIC ROCHESTER · PI WEINSHILBOUM, RICHARD M. · 1985 to 2019
$6.9M
Investigate the role of TPD52-AMPK pathway in tumorigenesis and cancer therapyR01CA196648 · NCI · MAYO CLINIC ROCHESTER · PI WANG, LIEWEI · 2016 to 2020
$1.7M
NCATS NIH HHS UL1 TR002377NCI NIH HHS N01 CA015083NCI NIH HHS P30 CA015083NCI NIH HHS P50 CA116201NCI NIH HHS R01 CA196648NIGMS NIH HHS R01 GM028157NIGMS NIH HHS T32 GM008685NIGMS NIH HHS U01 GM061388NIGMS NIH HHS U19 GM061388
6 · The paper itself

Abstract

Triple-negative breast cancer (TNBC) is a heterogeneous disease with poor prognosis that lacks targeted therapies, especially in patients with chemotherapy-resistant disease. Since DNA methylation-induced silencing of tumor suppressors is common in cancer, reversal of promoter DNA hypermethylation by 5-aza-2'-deoxycytidine (decitabine), an FDA-approved DNA methyltransferase (DNMT) inhibitor, has proven effective in treating hematological neoplasms. However, its antitumor effect varies in solid tumors, stressing the importance of identifying biomarkers predictive of therapeutic response. Here, we focused on the identification of biomarkers to select decitabine-sensitive TNBC through increasing our understanding of the mechanism of decitabine action. We showed that protein levels of DNMTs correlated with response to decitabine in patient-derived xenograft (PDX) organoids originating from chemotherapy-sensitive and -resistant TNBCs, suggesting DNMT levels as potential biomarkers of response. Furthermore, all 3 methytransferases, DNMT1, DNMT3A, and DNMT3B, were degraded following low-concentration, long-term decitabine treatment both in vitro and in vivo. The DNMT proteins could be ubiquitinated by the E3 ligase, TNF receptor-associated factor 6 (TRAF6), leading to lysosome-dependent protein degradation. Depletion of TRAF6 blocked decitabine-induced DNMT degradation, conferring resistance to decitabine. Our study suggests a potential mechanism of regulating DNMT protein degradation and DNMT levels as response biomarkers for DNMT inhibitors in TNBCs.

Indexed as

DNA (Cytosine-5-)-MethyltransferasesNeoplasm ProteinsTriple Negative Breast NeoplasmsAnimalsDecitabineEnzyme InhibitorsFemaleGene Expression Regulation, EnzymologicGene Expression Regulation, NeoplasticHEK293 CellsHumansMiceMice, Inbred NODMice, SCIDProteolysisXenograft Model Antitumor AssaysDecitabineDNA (Cytosine-5-)-MethyltransferasesEnzyme InhibitorsNeoplasm ProteinsBreast cancerDrug therapyMouse modelsOncologyTherapeutics

Identifiers

PMID29708513
PMCPMC5983332
OpenAlexW2802638385

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.