Evidence map›Paper›PMID 29706951›Full record

ArticleFrontiers in immunology2018

Transcriptional Modulation of Human Endogenous Retroviruses in Primary CD4+ T Cells Following Vorinostat Treatment.

Cory H White, Nadejda Beliakova-Bethell, Steven M Lada, Michael S Breen, Tara P Hurst, Celsa A Spina, Douglas D Richman, John Frater, Gkikas Magiorkinis, Christopher H Woelk

Abstract read
In one paragraph

Article in Frontiers in immunology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Human endogenous retroviruses and exogenous viral infections.Frontiers in cellular and infection microbiology · 2024
    Review
  8. Article
  9. Review
  10. Endogenous Retroviruses as Modulators of Innate Immunity.Pathogens (Basel, Switzerland) · 2023
    Review
  11. Article
  12. Article
  13. Review
  14. Review
  15. Review
  16. Review
  17. Review
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Cory H WhiteFaculty of Medicine, University of Southampton, Southampton, Hants, United Kingdom.
Nadejda Beliakova-BethellSan Diego VA Medical Center and Veterans Medical Research Foundation, San Diego, CA, United States.
Steven M LadaSan Diego VA Medical Center and Veterans Medical Research Foundation, San Diego, CA, United States.
Michael S BreenDepartment of Genetic and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, United States.
Tara P HurstDepartment of Zoology, University of Oxford, Oxford, United Kingdom.
Celsa A SpinaSan Diego VA Medical Center and Veterans Medical Research Foundation, San Diego, CA, United States.
Douglas D RichmanSan Diego VA Medical Center and Veterans Medical Research Foundation, San Diego, CA, United States.
John FraterNuffield Department of Clinical Medicine, Peter Medawar Building for Pathogen Research, South Parks Road, Oxford, United Kingdom.
Gkikas MagiorkinisDepartment of Zoology, University of Oxford, Oxford, United Kingdom.
Christopher H WoelkFaculty of Medicine, University of Southampton, Southampton, Hants, United Kingdom.

Funding

VirologyP30AI036214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUSAN JANET LITTLE · 1994 to 2026
$78.4M
Using NK Cells to eliminate the latent HIV reservoirU19AI096113 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KARN, JONATHAN · 2011 to 2015
$39.5M
Collaboratory of AIDS Researchers for Eradication (CARE)UM1AI126619 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MARGOLIS, DAVID M. · 2016 to 2020
$23.2M
Targeting regulators of cellular gene transcription to impact HIV latencyP01AI080193 · NIAID · VETERANS MEDICAL RESEARCH FDN/SAN DIEGO · PI RICHMAN, DOUGLAS D · 2009 to 2010
$1.8M
Synthetic Molecular Sensors to Target Latently Infected Cells for HIV EradicationR33AI104282 · NIAID · VETERANS MEDICAL RESEARCH FDN/SAN DIEGO · PI LOONEY, DAVID JAMES · 2016 to 2018
$1.3M
Synthetic Molecular Sensors to Target Latently Infected Cells for HIV EradicationR21AI104282 · NIAID · VETERANS MEDICAL RESEARCH FDN/SAN DIEGO · PI WOELK, CHRISTOPHER H · 2013 to 2014
$299k
BLRD VA IK2 BX002731Medical Research Council MR/L006588/1NIAID NIH HHS P01 AI080193NIAID NIH HHS P30 AI036214NIAID NIH HHS R21 AI104282NIAID NIH HHS R33 AI104282NIAID NIH HHS U19 AI096113NIAID NIH HHS UM1 AI126619
6 · The paper itself

Abstract

The greatest obstacle to a cure for HIV is the provirus that integrates into the genome of the infected cell and persists despite antiretroviral therapy. A "shock and kill" approach has been proposed as a strategy for an HIV cure whereby drugs and compounds referred to as latency-reversing agents (LRAs) are used to "shock" the silent provirus into active replication to permit "killing" by virus-induced pathology or immune recognition. The LRA most utilized to date in clinical trials has been the histone deacetylase (HDAC) inhibitor-vorinostat. Potentially, pathological off-target effects of vorinostat may result from the activation of human endogenous retroviruses (HERVs), which share common ancestry with exogenous retroviruses including HIV. To explore the effects of HDAC inhibition on HERV transcription, an unbiased pharmacogenomics approach (total RNA-Seq) was used to evaluate HERV expression following the exposure of primary CD4

Indexed as

Antirheumatic AgentsCD4-Positive T-LymphocytesCells, CulturedEndogenous RetrovirusesGene Expression RegulationHistone Deacetylase InhibitorsHIV-1HIV InfectionsHumansImmunityProvirusesTerminal Repeat SequencesVirus ActivationVirus LatencyVorinostatAntirheumatic AgentsHistone Deacetylase InhibitorsVorinostathistone deacetylase inhibitorhuman endogenous retroviruseslong terminal repeatprimary CD4+ T cellstotal RNA-Seq

Identifiers

PMID29706951
PMCPMC5906534

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.