Evidence map›Paper›PMID 29706644›Full record

ArticleEuropean journal of human genetics : EJHG2018

Distinct variants affecting differential splicing of TGFBR1 exon 5 cause either Loeys-Dietz syndrome or multiple self-healing squamous epithelioma.

Takayuki Fujiwara, Norifumi Takeda, Hironori Hara, Hiroyuki Morita, Jun Kishihara, Ryo Inuzuka, Hiroki Yagi, Sonoko Maemura, Haruhiro Toko, Mutsuo Harada and 7 more

Open access · bronzeAbstract readCase Reports
In one paragraph

Article in European journal of human genetics : EJHG, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Novel variant alters splicing ofFrontiers in genetics · 2024
    Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Germline Mutations for Kidney Volume in ADPKD.Kidney international reports · 2022
    Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Unique Mechanism by WhichCirculation reports · 2019
    Review
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 2 institutions in 1 country.

Takayuki Fujiwara
Norifumi TakedaDepartment of Cardiovascular Medicine, The University of Tokyo Hospital, 7-3-1 Hongo, Tokyo, 113-8655, Japan. notakeda-tky@umin.ac.jp.
Hironori HaraDepartment of Cardiovascular Medicine, The University of Tokyo Hospital, 7-3-1 Hongo, Tokyo, 113-8655, Japan.
Hiroyuki MoritaDepartment of Cardiovascular Medicine, The University of Tokyo Hospital, 7-3-1 Hongo, Tokyo, 113-8655, Japan.
Jun KishiharaDepartment of Cardiovascular Medicine, Kitasato University School of Medicine, 1-15-1 Kitasato, Minami-ku, Sagamihara, 252-0374, Japan.
Ryo InuzukaDepartment of Pediatrics, The University of Tokyo Hospital, 7-3-1 Hongo, Tokyo, 113-8655, Japan.
Hiroki YagiDepartment of Cardiovascular Medicine, The University of Tokyo Hospital, 7-3-1 Hongo, Tokyo, 113-8655, Japan.
Sonoko MaemuraDepartment of Cardiovascular Medicine, The University of Tokyo Hospital, 7-3-1 Hongo, Tokyo, 113-8655, Japan.
Haruhiro TokoDepartment of Cardiovascular Medicine, The University of Tokyo Hospital, 7-3-1 Hongo, Tokyo, 113-8655, Japan.
Mutsuo HaradaDepartment of Cardiovascular Medicine, The University of Tokyo Hospital, 7-3-1 Hongo, Tokyo, 113-8655, Japan.
Yuichi IkedaDepartment of Cardiovascular Medicine, The University of Tokyo Hospital, 7-3-1 Hongo, Tokyo, 113-8655, Japan.
Hidetoshi KumagaiDepartment of Cardiovascular Medicine, The University of Tokyo Hospital, 7-3-1 Hongo, Tokyo, 113-8655, Japan.
Seitaro NomuraDepartment of Cardiovascular Medicine, The University of Tokyo Hospital, 7-3-1 Hongo, Tokyo, 113-8655, Japan.
Eiki TakimotoDepartment of Cardiovascular Medicine, The University of Tokyo Hospital, 7-3-1 Hongo, Tokyo, 113-8655, Japan.
Hiroshi AkazawaDepartment of Cardiovascular Medicine, The University of Tokyo Hospital, 7-3-1 Hongo, Tokyo, 113-8655, Japan.
Junya AkoDepartment of Cardiovascular Medicine, Kitasato University School of Medicine, 1-15-1 Kitasato, Minami-ku, Sagamihara, 252-0374, Japan.
Issei KomuroDepartment of Cardiovascular Medicine, The University of Tokyo Hospital, 7-3-1 Hongo, Tokyo, 113-8655, Japan.
University of Tokyo Hospital · JPKitasato University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Variants in TGFBR1 have been reported to induce two completely distinct diseases, namely Loeys-Dietz syndrome (LDS) and multiple self-healing squamous epithelioma (MSSE). However, detailed mechanisms underlying this effect remain unknown. We report a Japanese familial case of LDS with a novel splice donor site variant in TGFBR1 gene (c.973 + 1 G > A; NG_007461.1). The intronic variant was predicted to mediate in-frame exon 5 skipping within the serine/threonine kinase (STK) domain, which may also be mediated by a similar TGFBR1 variant of a splice acceptor site in intron 4 (c.806-2 A > C), identified in a British familial case of MSSE. Therefore, ex vivo splicing and functional assays were performed in mammalian cells to evaluate the effect of these sequence variants. The MSSE variant activated a cryptic acceptor site at 76 bp downstream of the 3' natural splice acceptor site, which produced an out-of-frame transcript (r.807_882del, p.Asn270Thrfs*8). In contrast, the LDS variant generated two types of in-frame transcription products, r.[806_973del, 965_973 del], and produced two functionally inactivated proteins, p.[Asp269_Gln324del, Thr323_Gly325del], as a result of exon 5 skipping and the activation of a cryptic donor splice site at 9 bp upstream of the 5' natural splice donor site, respectively. Our results support the previously proposed but not yet approved mechanism that dominant-negative and truncating variants in STK domain induce LDS and MSSE, respectively.

Indexed as

Alternative SplicingMutation, MissenseCarcinomaExonsFemaleHEK293 CellsHumansKeratoacanthomaLoeys-Dietz SyndromeMaleMiddle AgedPedigreeReceptor, Transforming Growth Factor-beta Type IReceptor, Transforming Growth Factor-beta Type ITGFBR1 protein, human

Identifiers

PMID29706644
PMCPMC6057981
OpenAlexW2802357760

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.