Evidence map›Paper›PMID 29704047›Full record

ArticleMolecular genetics and genomics : MGG2018

Genome-wide evolutionary characterization and expression analyses of major latex protein (MLP) family genes in Vitis vinifera.

Ningbo Zhang, Ruimin Li, Wei Shen, Shuzhen Jiao, Junxiang Zhang, Weirong Xu

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Article in Molecular genetics and genomics : MGG, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
6.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

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3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 50 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Ningbo ZhangSchool of Agronomy, Ningxia University, Yinchuan, 750021, Ningxia, People's Republic of China.
Ruimin LiSchool of Agronomy, Ningxia University, Yinchuan, 750021, Ningxia, People's Republic of China.
Wei ShenSchool of Agronomy, Ningxia University, Yinchuan, 750021, Ningxia, People's Republic of China.
Shuzhen JiaoSchool of Agronomy, Ningxia University, Yinchuan, 750021, Ningxia, People's Republic of China.
Junxiang ZhangSchool of Agronomy, Ningxia University, Yinchuan, 750021, Ningxia, People's Republic of China. zhangjunxiang@126.com.
Weirong XuSchool of Agronomy, Ningxia University, Yinchuan, 750021, Ningxia, People's Republic of China. xuwr@nxu.edu.cn.
Ningxia University · CN

Funding

Major Science and Technology Program of Ningxia Hui Autonomous Region 2016BZ06National Natural Science Foundation of China 31560550Western First-class Discipline Construction Project of Horticulture NXYLXK2017B03
6 · The paper itself

Abstract

The major latex protein/ripening-related protein (MLP/RRP) subfamily is known to be involved in a wide range of biological processes of plant development and various stress responses. However, the biological function of MLP/RRP proteins is still far from being clear and identification of them may provide important clues for understanding their roles. Here, we report a genome-wide evolutionary characterization and gene expression analysis of the MLP family in European Vitis species. A total of 14 members, was found in the grape genome, all of which are located on chromosome 1, where are predominantly arranged in tandem clusters. We have noticed, most surprisingly, promoter-sharing by several non-identical but highly similar gene members to a greater extent than expected by chance. Synteny analysis between the grape and Arabidopsis thaliana genomes suggested that 3 grape MLP genes arose before the divergence of the two species. Phylogenetic analysis provided further insights into the evolutionary relationship between the genes, as well as their putative functions, and tissue-specific expression analysis suggested distinct biological roles for different members. Our expression data suggested a couple of candidate genes involved in abiotic stresses and phytohormone responses. The present work provides new insight into the evolution and regulation of Vitis MLP genes, which represent targets for future studies and inclusion in tolerance-related molecular breeding programs.

Indexed as

Evolution, MolecularGene Expression Regulation, PlantGenome, PlantAmino Acid SequenceArabidopsisChromosome MappingGene Expression ProfilingMultigene FamilyPhylogenyPlant ProteinsSequence AlignmentSyntenyVitisPlant ProteinsEnvironmental stressExpression analysisPhylogenetic analysisVitis·major latex protein and ripening-related protein (MLP/RRP)

Identifiers

PMID29704047
OpenAlexW2802284585

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.