Evidence map›Paper›PMID 29704004›Full record

ArticleScientific reports2018

The transcription factor Spores Absent A is a PKA dependent inducer of Dictyostelium sporulation.

Yoko Yamada, Andrew Cassidy, Pauline Schaap

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

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  6. Loss of PIKfyve Causes Transdifferentiation ofFrontiers in cell and developmental biology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Yoko YamadaSchool of Life Sciences, University of Dundee, Dundee, DD15EH, Angus, UK.
Andrew CassidyTayside Centre for Genomic Analysis, University of Dundee, Dundee, DD19SY, Angus, UK.
Pauline SchaapSchool of Life Sciences, University of Dundee, Dundee, DD15EH, Angus, UK. p.schaap@dundee.ac.uk.ORCID 0000-0003-4500-2555
University of Dundee · GB

Funding

Wellcome TrustWellcome Trust 100293/Z/12/Z
6 · The paper itself

Abstract

Sporulation in Dictyostelium fruiting bodies evolved from amoebozoan encystation with both being induced by cAMP acting on PKA, but with downstream components still being unknown. Using tagged mutagenesis to find missing pathway components, we identified a sporeless mutant defective in a nuclear protein, SpaA. Expression of prespore genes was strongly reduced in spaA- cells, while expression of many spore stage genes was absent. Chromatin immunoprecipitation (ChIP) of a SpaA-YFP gene fusion showed that (pre)spore gene promoters bind directly to SpaA, identifying SpaA as a transcriptional regulator. SpaA dependent spore gene expression required PKA in vivo and was stimulated in vitro by the membrane-permeant PKA agonist 8Br-cAMP. The PKA agonist also promoted SpaA binding to (pre)spore promoters, placing SpaA downstream of PKA. Sequencing of SpaA-YFP ChIPed DNA fragments revealed that SpaA binds at least 117 (pre)spore promoters, including those of other transcription factors that activate some spore genes. These factors are not in turn required for spaA expression, identifying SpaA as the major trancriptional inducer of sporulation.

Indexed as

Chromatin ImmunoprecipitationCyclic AMP-Dependent Protein KinasesDictyosteliumDNA Mutational AnalysisDNA, ProtozoanGene DeletionGene Expression ProfilingPromoter Regions, GeneticProtein BindingSpores, ProtozoanTranscription FactorsCyclic AMP-Dependent Protein KinasesDNA, ProtozoanTranscription Factors

Identifiers

PMID29704004
PMCPMC5923282
OpenAlexW2802766535

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.