Evidence map›Paper›PMID 29703940›Full record

ArticleNature communications2018

The genetic architecture of floral traits in the woody plant Prunus mume.

Qixiang Zhang, He Zhang, Lidan Sun, Guangyi Fan, Meixia Ye, Libo Jiang, Xin Liu, Kaifeng Ma, Chengcheng Shi, Fei Bao and 17 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 121 citations in OpenAlex.

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  12. The haplotype-phased genome assembly facilitated the deciphering of the bud dormancy-related QTLs in Prunus mume.DNA research : an international journal for rapid publication of reports on genes and genomes · 2024
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  20. A 49-bp deletion ofHorticulture research · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 4 institutions in 3 countries.

Qixiang ZhangBeijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China. zqx@bjfu.edu.cn.
He ZhangBGI-Qingdao, BGI-Shenzhen, Qingdao, 266555, China.ORCID http://orcid.org/0000-0001-9294-1403
Lidan SunBeijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China.
Guangyi FanBGI-Qingdao, BGI-Shenzhen, Qingdao, 266555, China.
Meixia YeCenter for Computational Biology & Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China.
Libo JiangCenter for Computational Biology & Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China.
Xin LiuBGI-Qingdao, BGI-Shenzhen, Qingdao, 266555, China.ORCID http://orcid.org/0000-0003-3256-2940
Kaifeng MaBeijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China.
Chengcheng ShiBGI-Qingdao, BGI-Shenzhen, Qingdao, 266555, China.
Fei BaoBeijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China.
Rui GuanBGI-Qingdao, BGI-Shenzhen, Qingdao, 266555, China.
Yu HanBeijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China.
Yuanyuan FuBGI-Qingdao, BGI-Shenzhen, Qingdao, 266555, China.
Huitang PanBeijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China.
Zhaozhe ChenBGI-Qingdao, BGI-Shenzhen, Qingdao, 266555, China.
Liangwei LiBGI-Qingdao, BGI-Shenzhen, Qingdao, 266555, China.
Jia WangBeijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China.
Meiqi LvBGI-Qingdao, BGI-Shenzhen, Qingdao, 266555, China.
Tangchun ZhengBeijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China.
Cunquan YuanBeijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China.
Yuzhen ZhouBeijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China.
Simon Ming-Yuen LeeState Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macau, 999078, China.
Xiaolan YanMei Research Center of China, Wuhan, 430074, China.
Xun XuBGI-Qingdao, BGI-Shenzhen, Qingdao, 266555, China.
Rongling WuCenter for Statistical Genetics, Departments of Public Health Sciences and Statistics, The Pennsylvania State University, Hershey, PA, 17033, USA. rwu@phs.psu.edu.
Wenbin ChenBGI-Qingdao, BGI-Shenzhen, Qingdao, 266555, China. chenwenbin@genomics.cn.
Tangren ChengBeijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China. chengtangren@163.com.
Beijing Forestry University · CNBGI Group (China) · CNPennsylvania State University · USUniversity of Macau · MO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mei (Prunus mume) is an ornamental woody plant that has been domesticated in East Asia for thousands of years. High diversity in floral traits, along with its recent genome sequence, makes mei an ideal model system for studying the evolution of woody plants. Here, we investigate the genetic architecture of floral traits in mei and its domestication history by sampling and resequencing a total of 351 samples including 348 mei accessions and three other Prunus species at an average sequencing depth of 19.3×. Highly-admixed population structure and introgression from Prunus species are identified in mei accessions. Through a genome-wide association study (GWAS), we identify significant quantitative traits locus (QTLs) and genomic regions where several genes, such as MYB108, are positively associated with petal color, stigma color, calyx color, and bud color. Results from this study shed light on the genetic basis of domestication in flowering plants, particularly woody plants.

Indexed as

PhenotypeChromosome MappingDomesticationFlowersGenome, PlantGenome-Wide Association StudyPhylogenyPrunusQuantitative Trait LociSequence Analysis, RNA

Identifiers

PMID29703940
PMCPMC5923208
OpenAlexW2803401462

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.