Evidence map›Paper›PMID 29703163›Full record

ArticleBMC cancer2018

Development of a computational promoter with highly efficient expression in tumors.

Shu-Yi Ho, Bo-Hau Chang, Chen-Han Chung, Yu-Ling Lin, Cheng-Hsun Chuang, Pei-Jung Hsieh, Wei-Chih Huang, Nu-Man Tsai, Sheng-Chieh Huang, Yen-Ku Liu and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC cancer, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 94% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Shu-Yi HoDepartment of Biological Science and Technology, National Chiao Tung University, Hsinchu, Taiwan, Republic of China.
Bo-Hau ChangDepartment of Biological Science and Technology, National Chiao Tung University, Hsinchu, Taiwan, Republic of China.
Chen-Han ChungInstitute of Molecular Medicine and Bioengineering, National Chiao Tung University, Hsinchu, 30050, Taiwan, Republic of China.
Yu-Ling LinDepartment of Biological Science and Technology, National Chiao Tung University, Hsinchu, Taiwan, Republic of China.
Cheng-Hsun ChuangInstitute of Molecular Medicine and Bioengineering, National Chiao Tung University, Hsinchu, 30050, Taiwan, Republic of China.
Pei-Jung HsiehDepartment of Biological Science and Technology, National Chiao Tung University, Hsinchu, Taiwan, Republic of China.
Wei-Chih HuangInstitute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu, 300, Taiwan, Republic of China.
Nu-Man TsaiSchool of Medical and Laboratory Biotechnology, Chung Shan Medical University, Taichung, Taiwan, Republic of China.
Sheng-Chieh HuangDepartment of Surgery, National Yang Ming University, Taipei, Taiwan, Republic of China.
Yen-Ku LiuInstitute of Molecular Medicine and Bioengineering, National Chiao Tung University, Hsinchu, 30050, Taiwan, Republic of China.
Yu-Chih LoDepartment of Biotechnology and Bioindustry Sciences, College of Bioscience and Biotechnology, National Cheng Kung University, Tainan, Taiwan, Republic of China.
Kuang-Wen LiaoDepartment of Biological Science and Technology, National Chiao Tung University, Hsinchu, Taiwan, Republic of China. liaonms@mail.nctu.edu.tw.ORCID 0000-0003-2131-3666
National Yang Ming Chiao Tung University · TWChung Shan Medical University Hospital · TWNational Cheng Kung University · TW

Funding

Ministry of Science and Technology, Taiwan MOST 103-2320-B-009-008Top University Program of the National Chiao Tung University and Ministry of Education 104W970Top University Program of the National Chiao Tung University and Ministry of Education 105W970
6 · The paper itself

Abstract

backgroundGene therapy is a potent method to increase the therapeutic efficacy against cancer. However, a gene that is specifically expressed in the tumor area has not been identified. In addition, nonspecific expression of therapeutic genes in normal tissues may cause side effects that can harm the patients' health. Certain promoters have been reported to drive therapeutic gene expression specifically in cancer cells; however, low expression levels of the target gene are a problem for providing good therapeutic efficacy. Therefore, a specific and highly expressive promoter is needed for cancer gene therapy.

methodsBioinformatics approaches were utilized to analyze transcription factors (TFs) from high-throughput data. Reverse transcription polymerase chain reaction, western blotting and cell transfection were applied for the measurement of mRNA, protein expression and activity. C57BL/6JNarl mice were injected with pD5-hrGFP to evaluate the expression of TFs.

resultsWe analyzed bioinformatics data and identified three TFs, nuclear factor kappa-light-chain-enhancer of activated B cells (NF-κB), cyclic AMP response element binding protein (CREB), and hypoxia-inducible factor-1α (HIF-1α), that are highly active in tumor cells. Here, we constructed a novel mini-promoter, D5, that is composed of the binding sites of the three TFs. The results show that the D5 promoter specifically drives therapeutic gene expression in tumor tissues and that the strength of the D5 promoter is directly proportional to tumor size.

conclusionsOur results show that bioinformatics may be a good tool for the selection of appropriate TFs and for the design of specific mini-promoters to improve cancer gene therapy.

Indexed as

Computational BiologyGene Expression Regulation, NeoplasticPromoter Regions, GeneticAnimalsCell Line, TumorGene ExpressionGene Expression ProfilingGenes, ReporterGenetic VectorsHumansMiceMice, TransgenicNeoplasmsProtein BindingProtein Interaction MappingTranscription FactorsTranscription FactorsGene therapyHIF-1αNF-κB and CREBTranscription factor

Identifiers

PMID29703163
PMCPMC5924487
OpenAlexW2806501335

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.