Evidence map›Paper›PMID 29703152›Full record

ArticleBMC genomics2018

Analysis of Theileria orientalis draft genome sequences reveals potential species-level divergence of the Ikeda, Chitose and Buffeli genotypes.

Daniel R Bogema, Melinda L Micallef, Michael Liu, Matthew P Padula, Steven P Djordjevic, Aaron E Darling, Cheryl Jenkins

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 35 citations in OpenAlex.

  1. From Benign Parasite to Emerging Pathogen: A Review ofAnimals : an open access journal from MDPI · 2026
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  4. Acute infection with the U.S. isolate ofFrontiers in veterinary science · 2026
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  6. International journal of systematic and evolutionary microbiology · 2025
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  7. International journal of systematic and evolutionary microbiology · 2024
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  8. Article
  9. Epidemiology and Transmission ofPathogens (Basel, Switzerland) · 2023
    Review
  10. Distribution ofPathogens (Basel, Switzerland) · 2022
    Article
  11. Characterisation of thePathogens (Basel, Switzerland) · 2022
    Article
  12. Complete Genomes ofPathogens (Basel, Switzerland) · 2022
    Article
  13. Review
  14. Approaches to Integrated Parasite Management (IPM) forPathogens (Basel, Switzerland) · 2021
    Review
  15. Systematic Comparison of the Performances ofFrontiers in cellular and infection microbiology · 2021
    Article
  16. Comparative Genomics ofMicroorganisms · 2020
    Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Daniel R BogemaNSW Department of Primary Industries, Elizabeth Macarthur Agricultural Institute, Menangle, NSW, Australia.
Melinda L MicallefNSW Department of Primary Industries, Elizabeth Macarthur Agricultural Institute, Menangle, NSW, Australia.
Michael LiuThe ithree institute, University of Technology Sydney, Ultimo, NSW, Australia.
Matthew P PadulaThe ithree institute, University of Technology Sydney, Ultimo, NSW, Australia.
Steven P DjordjevicThe ithree institute, University of Technology Sydney, Ultimo, NSW, Australia.
Aaron E DarlingThe ithree institute, University of Technology Sydney, Ultimo, NSW, Australia.
Cheryl JenkinsNSW Department of Primary Industries, Elizabeth Macarthur Agricultural Institute, Menangle, NSW, Australia. cheryl.jenkins@dpi.nsw.gov.au.ORCID http://orcid.org/0000-0002-5966-072X
University of Technology Sydney · AUNew South Wales Department of Primary Industries · AU

Funding

Meat and Livestock Australia B.AHE.0213
6 · The paper itself

Abstract

backgroundTheileria orientalis (Apicomplexa: Piroplasmida) has caused clinical disease in cattle of Eastern Asia for many years and its recent rapid spread throughout Australian and New Zealand herds has caused substantial economic losses to production through cattle deaths, late term abortion and morbidity. Disease outbreaks have been linked to the detection of a pathogenic genotype of T. orientalis, genotype Ikeda, which is also responsible for disease outbreaks in Asia. Here, we sequenced and compared the draft genomes of one pathogenic (Ikeda) and two apathogenic (Chitose, Buffeli) isolates of T. orientalis sourced from Australian herds.

resultsUsing de novo assembled sequences and a single nucleotide variant (SNV) analysis pipeline, we found extensive genetic divergence between the T. orientalis genotypes. A genome-wide phylogeny reconstructed to address continued confusion over nomenclature of this species displayed concordance with prior phylogenetic studies based on the major piroplasm surface protein (MPSP) gene. However, average nucleotide identity (ANI) values revealed that the divergence between isolates is comparable to that observed between other theilerias which represent distinct species. Analysis of SNVs revealed putative recombination between the Chitose and Buffeli genotypes and also between Australian and Japanese Ikeda isolates. Finally, to inform future vaccine studies, dN/dS ratios and surface location predictions were analysed. Six predicted surface protein targets were confirmed to be expressed during the piroplasm phase of the parasite by mass spectrometry.

conclusionsWe used whole genome sequencing to demonstrate that the T. orientalis Ikeda, Chitose and Buffeli variants show substantial genetic divergence. Our data indicates that future researchers could potentially consider disease-associated Ikeda and closely related genotypes as a separate species from non-pathogenic Chitose and Buffeli.

Indexed as

Genome, ProtozoanAnimalsAustraliaCattleDNA, ProtozoanGenotypePhylogenyProtozoan ProteinsSpecies SpecificityTheileriaTheileriasisWhole Genome SequencingDNA, ProtozoanProtozoan ProteinsGenomePhylogenomicsTheileria orientalisVaccine

Identifiers

PMID29703152
PMCPMC5921998
OpenAlexW2803151916

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.