Evidence map›Paper›PMID 29703146›Full record

ArticleBMC genomics2018

Identification of a novel fused gene family implicates convergent evolution in eukaryotic calcium signaling.

Fei Chen, Liangsheng Zhang, Zhenguo Lin, Zong-Ming Max Cheng

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 4 institutions in 3 countries.

Fei ChenState Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops; Center for Genomics and Biotechnology; Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology; Ministry of Education Key Laboratory of Genetics, Breeding and Multiple Utilization of Corps; Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Liangsheng ZhangState Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops; Center for Genomics and Biotechnology; Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology; Ministry of Education Key Laboratory of Genetics, Breeding and Multiple Utilization of Corps; Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Zhenguo LinDepartment of Biology, Saint Louis University, St. Louis, 63103-2010, USA.
Zong-Ming Max ChengCollege of Horticulture, Nanjing Agricultural University, Nanjing, 210095, China. zmc@njau.edu.cn.
Genomics (United Kingdom) · GBNanjing Agricultural University · CNSaint Louis University · USUniversity of Tennessee at Knoxville · US

Funding

China Scholarship Council 201406850018Priority Academic Program Development of Modern Horticulture Science in Jiangsu Province CX(14)2051State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops SKB2017004Tennessee Agricultural Experiment Station, University of Tennessee 1009395Wellcome Trust
6 · The paper itself

Abstract

backgroundBoth calcium signals and protein phosphorylation responses are universal signals in eukaryotic cell signaling. Currently three pathways have been characterized in different eukaryotes converting the Ca

resultsBased on the exploration of genomes and transcriptomes from all the six eukaryotic supergroups, we report here in Metakinetoplastina protists a novel gene family. This family, with a proposed name SCAMK, comprises SnRK3 fused calmodulin-like III kinase genes and was likely evolved through the insertion of a calmodulin-like3 gene into an SnRK3 gene by unequal crossover of homologous chromosomes in meiosis cell. Its origin dated back to the time intersection at least 450 million-year-ago when Excavata parasites, Vertebrata hosts, and Insecta vectors evolved. We also analyzed SCAMK's unique expression pattern and structure, and proposed it as one of the leading calcium signal conversion pathways in Excavata parasite. These characters made SCAMK gene as a potential drug target for treating human African trypanosomiasis.

conclusionsThis report identified a novel gene fusion and dated its precise fusion time in Metakinetoplastina protists. This potential fourth eukaryotic calcium signal conversion pathway complements our current knowledge that convergent evolution occurs in eukaryotic calcium signaling.

Indexed as

Biological EvolutionComputational BiologyGene FusionMultigene FamilyAnimalsCalciumCalcium SignalingEukaryotaGene Expression RegulationPhylogenyPlantsCalciumCalcium signalingMetakinetoplastina protistsProtein phosphorylation

Identifiers

PMID29703146
PMCPMC5924475
OpenAlexW2803991806

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.