Evidence map›Paper›PMID 29703139›Full record

ArticleBMC genomics2018

Identification of a novel Dlg2 isoform differentially expressed in IFNβ-producing plasmacytoid dendritic cells.

Shafaqat Ali, Alexander Hoven, Regine J Dress, Heiner Schaal, Judith Alferink, Stefanie Scheu

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Shafaqat AliInstitute of Medical Microbiology and Hospital Hygiene, Heinrich, Heine University of Düsseldorf, Universitätsstraße 1, D-40225, Düsseldorf, Germany.
Alexander HovenInstitute of Medical Microbiology and Hospital Hygiene, Heinrich, Heine University of Düsseldorf, Universitätsstraße 1, D-40225, Düsseldorf, Germany.
Regine J DressInstitute of Medical Microbiology and Hospital Hygiene, Heinrich, Heine University of Düsseldorf, Universitätsstraße 1, D-40225, Düsseldorf, Germany.
Heiner SchaalInstitute of Virology, Heinrich Heine University of Düsseldorf, Universitätsstraße 1, D-40225, Düsseldorf, Germany.
Judith AlferinkCluster of Excellence EXC 1003, Cells in Motion, Waldeyerstraße 15, D-48149, Münster, Germany.
Stefanie ScheuInstitute of Medical Microbiology and Hospital Hygiene, Heinrich, Heine University of Düsseldorf, Universitätsstraße 1, D-40225, Düsseldorf, Germany. stefanie.scheu@uni-duesseldorf.de.
Heinrich Heine University Düsseldorf · DEUniversity Hospital Münster · DE

Funding

Alzheimer Forschung Initiative 14835Deutsche Forschungsgemeinschaft EXC 1003, Grant FF-2014-01 Cells in Motion-Cluster of ExcellenceDeutsche Forschungsgemeinschaft FOR 2107, AL 1145/5-2Deutsche Forschungsgemeinschaft IZKF, Grant Alf3/018/16Deutsche Forschungsgemeinschaft SCHE692/3-1Deutsche Forschungsgemeinschaft SCHE692/4-1Heinrich-Heine-Universität Düsseldorf Research Commission of the Medical Faculty 30/2016
6 · The paper itself

Abstract

backgroundThe murine discs large homolog 2 (DLG2; post synaptic density 93 (PSD-93); Chapsyn-110) is a member of the membrane-associated guanylate kinase (MAGUK) protein family involved in receptor assembly and associated with signaling enzymes on cell membranes. In neurons, DLG2 protein isoforms derived from alternatively spliced transcripts have been described to bind to NMDA (N-methyl-aspartate) receptors and K channels and to mediate clustering of these channels in the postsynaptic membrane. In myeloid cells of the immune system, such as dendritic cells (DCs), a lack of data exists on the expression or function of DLG2. In cDNA microarray transcriptome analyses, we found Dlg2 highly expressed in a subpopulation of plasmacytoid DCs (pDCs) stimulated to produce type I interferons (IFNs) such as IFNβ.

resultsUsing RACE- and RT-PCR as well as immunoprecipitation followed by Western blotting we characterised the differential expression of the Dlg2 splice variants in IFNβ-producing pDCs. Besides Dlg2ɣ this cell population expressed a novel short Dlg2η transcript we termed Dlg2η3. Our expression data were integrated into information from genome databases to obtain a novel and comprehensive overview of the mouse Dlg2 gene architecture. To elucidate the intracellular localisation pattern of protein isoforms, ectopical expression analysis of fluorescently tagged DLG2 splice variants was performed. Here we found an enrichment of the larger isoform DLG2α1 at the plasma membrane while the newly identified shorter (DLG2η) isoform as well as DLG2ɣ were equally distributed throughout the cytoplasm. Additionally, DLG2η was also found in the nucleus. Analysis of Dlg2-knockout mice previously generated by deleting exon 9 surprisingly revealed that the protein for the novel DLG2η isoform was still expressed in the brain and in bone marrow-derived pDCs from mice carrying the homozygous deletion (Dlg2

conclusionWe describe a novel splice variant of the mouse Dlg2 gene termed Dlg2η and define the differential expression pattern of DLG2 isoforms in IFNβ-producing pDCs. The presence of DLG2η protein in the CNS of Dlg2

Indexed as

Alternative SplicingAnimalsBone MarrowBrainCell MembraneCell NucleusCytoplasmDendritic CellsGene Expression ProfilingGene Knockout TechniquesGuanylate KinasesHEK293 CellsHumansInterferon-betaMembrane ProteinsMiceDlg2 protein, mouseGuanylate KinasesInterferon-betaMembrane ProteinsProtein IsoformsDlg2IFNβIsoformsPlasmacytoid dendritic cellsPSD-93

Identifiers

PMID29703139
PMCPMC6389146
OpenAlexW2789333545

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.