Evidence map›Paper›PMID 29702646›Full record

ArticlePLoS neglected tropical diseases2018

Characterization of a novel organic solute transporter homologue from Clonorchis sinensis.

Yanyan Lu, Won Gi Yoo, Fuhong Dai, Ji-Yun Lee, Jhang Ho Pak, Woon-Mok Sohn, Sung-Jong Hong

Abstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

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  6. Frontiers in cellular and infection microbiology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yanyan LuDepartment of Medical Environmental Biology, Chung-Ang University College of Medicine, Seoul, Korea.
Won Gi YooDepartment of Medical Environmental Biology, Chung-Ang University College of Medicine, Seoul, Korea.
Fuhong DaiDepartment of Medical Environmental Biology, Chung-Ang University College of Medicine, Seoul, Korea.
Ji-Yun LeeDepartment of Medical Environmental Biology, Chung-Ang University College of Medicine, Seoul, Korea.
Jhang Ho PakDepartment of Convergence Medicine University of Ulsan College of Medicine and Asan Institute for Life Sciences, Asan Medical Center, Seoul, Korea.
Woon-Mok SohnDepartment of Parasitology and Institute of Health Sciences, Gyeongsang National University School of Medicine, Jinju, Korea.
Sung-Jong HongDepartment of Medical Environmental Biology, Chung-Ang University College of Medicine, Seoul, Korea.ORCID 0000-0002-8677-4714

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Clonorchis sinensis is a liver fluke that can dwell in the bile ducts of mammals. Bile acid transporters function to maintain the homeostasis of bile acids in C. sinensis, as they induce physiological changes or have harmful effects on C. sinensis survival. The organic solute transporter (OST) transports mainly bile acid and belongs to the SLC51 subfamily of solute carrier transporters. OST plays a critical role in the recirculation of bile acids in higher animals. In this study, we cloned full-length cDNA of the 480-amino acid OST from C. sinensis (CsOST). Genomic analysis revealed 11 exons and nine introns. The CsOST protein had a 'Solute_trans_a' domain with 67% homology to Schistosoma japonicum OST. For further analysis, the CsOST protein sequence was split into the ordered domain (CsOST-N) at the N-terminus and disordered domain (CsOST-C) at the C-terminus. The tertiary structure of each domain was built using a threading-based method and determined by manual comparison. In a phylogenetic tree, the CsOST-N domain belonged to the OSTα and CsOST-C to the OSTβ clade. These two domains were more highly conserved with the OST α- and β-subunits at the structure level than at sequence level. These findings suggested that CsOST comprised the OST α- and β-subunits. CsOST was localized in the oral and ventral suckers and in the mesenchymal tissues abundant around the intestine, vitelline glands, uterus, and testes. This study provides fundamental data for the further understanding of homologues in other flukes.

Indexed as

Amino Acid SequenceAnimalsBile Acids and SaltsBiological TransportCarrier ProteinsClonorchiasisClonorchis sinensisFemaleHelminth ProteinsMembrane GlycoproteinsMice, Inbred BALB CModels, MolecularPhylogenyProtein TransportRecombinant ProteinsSequence Alignmentbile acid binding proteinsBile Acids and SaltsCarrier ProteinsHelminth ProteinsMembrane GlycoproteinsRecombinant Proteins

Identifiers

PMID29702646
PMCPMC5942847

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.