Evidence map›Paper›PMID 29702639›Full record

ArticlePLoS genetics2018

A Caenorhabditis elegans protein with a PRDM9-like SET domain localizes to chromatin-associated foci and promotes spermatocyte gene expression, sperm production and fertility.

Christoph G Engert, Rita Droste, Alexander van Oudenaarden, H Robert Horvitz

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Christoph G EngertDept. Biology, MIT, Cambridge, MA, United States of America.
Rita DrosteDept. Biology, MIT, Cambridge, MA, United States of America.ORCID 0000-0003-2567-8611
Alexander van OudenaardenDept. Biology, MIT, Cambridge, MA, United States of America.
H Robert HorvitzDept. Biology, MIT, Cambridge, MA, United States of America.ORCID 0000-0002-9964-9613
Howard Hughes Medical Institute · USIIT@MIT · US

Funding

TRANS-NETWORK PROJECTSU54CA143874 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI CHAKRABORTY, ARUP K. · 2009 to 2013
$15.1M
Genetic Analysis of Nematode Egg Laying and Co-regulated Behavioral SystemsR01GM024663 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI HORVITZ, H ROBERT · 1985 to 2025
$10.1M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Stochastic gene expression in differentiation and developmentDP1CA174420 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI VAN OUDENAARDEN, ALEXANDER · 2012 to 2012
$832k
GENETIC ANALYSIS OF NEMATODE EGG-LAYINGR37GM024663 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI HORVITZ, H R · 1991 to 2000
$363k
NCI NIH HHS DP1 CA174420NCI NIH HHS U54 CA143874NIGMS NIH HHS R01 GM024663NIGMS NIH HHS R37 GM024663NIH HHS GM24663NIH HHS P40 OD010440NIH HHS U54CA143874
6 · The paper itself

Abstract

To better understand the tissue-specific regulation of chromatin state in cell-fate determination and animal development, we defined the tissue-specific expression of all 36 C. elegans presumptive lysine methyltransferase (KMT) genes using single-molecule fluorescence in situ hybridization (smFISH). Most KMTs were expressed in only one or two tissues. The germline was the tissue with the broadest KMT expression. We found that the germline-expressed C. elegans protein SET-17, which has a SET domain similar to that of the PRDM9 and PRDM7 SET-domain proteins, promotes fertility by regulating gene expression in primary spermatocytes. SET-17 drives the transcription of spermatocyte-specific genes from four genomic clusters to promote spermatid development. SET-17 is concentrated in stable chromatin-associated nuclear foci at actively transcribed msp (major sperm protein) gene clusters, which we term msp locus bodies. Our results reveal the function of a PRDM9/7-family SET-domain protein in spermatocyte transcription. We propose that the spatial intranuclear organization of chromatin factors might be a conserved mechanism in tissue-specific control of transcription.

Indexed as

AnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsChromatinFertilityGene Expression RegulationGerm CellsHistone-Lysine N-MethyltransferaseIn Situ Hybridization, FluorescenceMaleMultigene FamilyNuclear ProteinsPolycomb-Group ProteinsRNA, MessengerSpermatocytesTranscription, GeneticCaenorhabditis elegans ProteinsChromatinHistone-Lysine N-MethyltransferaseNuclear ProteinsPolycomb-Group ProteinsRNA, MessengerSet-17 protein, C elegans

Identifiers

PMID29702639
PMCPMC5942854
OpenAlexW2801974805

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.