Evidence map›Paper›PMID 29702150›Full record

ArticleFree radical biology & medicine2018

Mapping three guanine oxidation products along DNA following exposure to three types of reactive oxygen species.

Brock Matter, Christopher L Seiler, Kristopher Murphy, Xun Ming, Jianwei Zhao, Bruce Lindgren, Roger Jones, Natalia Tretyakova

Abstract read
In one paragraph

Article in Free radical biology & medicine, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 28 citations in OpenAlex.

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  6. Evidence-based complementary and alternative medicine : eCAM · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Brock MatterDepartment of Medicinal Chemistry and Masonic Cancer Center, University of Minnesota, Minneapolis, MN 55455, USA.
Christopher L SeilerDepartment of Medicinal Chemistry and Masonic Cancer Center, University of Minnesota, Minneapolis, MN 55455, USA.
Kristopher MurphyDepartment of Medicinal Chemistry and Masonic Cancer Center, University of Minnesota, Minneapolis, MN 55455, USA.
Xun MingDepartment of Medicinal Chemistry and Masonic Cancer Center, University of Minnesota, Minneapolis, MN 55455, USA.
Jianwei ZhaoDepartment of Chemistry, Rutgers University, Piscataway, NJ 08854, USA.
Bruce LindgrenBiostatistics Core, Masonic Cancer Center, University of Minnesota, Minneapolis, MN 55455, USA.
Roger JonesDepartment of Chemistry, Rutgers University, Piscataway, NJ 08854, USA.
Natalia TretyakovaDepartment of Medicinal Chemistry and Masonic Cancer Center, University of Minnesota, Minneapolis, MN 55455, USA. Electronic address: trety001@umn.edu.
University of Minnesota · USRutgers, The State University of New Jersey · US

Funding

University of Minnesota Clinical and Translational Science Institute (UMN CTSI)UL1TR002494 · NCATS · UNIVERSITY OF MINNESOTA · PI BLAZAR, BRUCE R, WEISDORF, DANIEL J · 2018 to 2022
$34.9M
Smoking-Induced Epigenetic Changes in the Lung: Role of DNA DemethylationR01CA095039 · NCI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI TRETYAKOVA, NATALIA Y · 2003 to 2022
$3.6M
Sequence Distribution of Tabacco Carcinogen-DNA AdductsR56CA095039 · NCI · UNIVERSITY OF MINNESOTA · PI TRETYAKOVA, NATALIA Y · 2007 to 2007
$237k
NCATS NIH HHS UL1 TR002494NCI NIH HHS R01 CA095039NCI NIH HHS R56 CA095039
6 · The paper itself

Abstract

Reactive oxygen and nitrogen species generated during respiration, inflammation, and immune response can damage cellular DNA, contributing to aging, cancer, and neurodegeneration. The ability of oxidized DNA bases to interfere with DNA replication and transcription is strongly influenced by their chemical structures and locations within the genome. In the present work, we examined the influence of local DNA sequence context, DNA secondary structure, and oxidant identity on the efficiency and the chemistry of guanine oxidation in the context of the Kras protooncogene. A novel isotope labeling strategy developed in our laboratory was used to accurately map the formation of 2,2-diamino-4-[(2-deoxy-β-D-erythropentofuranosyl)amino]- 5(2 H)-oxazolone (Z), 8-oxo-7,8-dihydro-2'-deoxyguanosine (OG), and 8-nitroguanine (8-NO

Indexed as

DNA DamageDeoxyguanosineDNAGuanineHumansOxidation-ReductionReactive Oxygen Species8-nitroguanineDeoxyguanosineDNAGuanineReactive Oxygen Species8-oxo-guanineDNA damageIsotope labeling of DNA-mass spectrometryKras protooncogeneReactive oxygen species

Identifiers

PMID29702150
PMCPMC6858621
OpenAlexW2799972899

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.