Evidence map›Paper›PMID 29702004›Full record

ArticleJournal of dental research2018

Human tRNA-Derived Small RNAs Modulate Host-Oral Microbial Interactions.

X He, F Li, B Bor, K Koyano, L Cen, X Xiao, W Shi, D T W Wong

Open access · greenAbstract read
In one paragraph

Article in Journal of dental research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 2 pooled it
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 2 syntheses or guidelines pooled it, 30 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Transfer RNA Fragments in Diseases of Sensory Organs.International journal of molecular sciences · 2026
    Review
  5. Article
  6. Review
  7. Review
  8. Isolation of Fusobacterium nucleatum-Induced Host Exosomal sRNAs.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  9. Review
  10. Review
  11. Review
  12. Review
  13. Article
  14. Article
  15. Diverse plant RNAs coatProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  16. Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

X He1 The Forsyth Institute, Cambridge, MA, USA.
F Li2 School of Dentistry, University of California, Los Angeles, Los Angeles, CA, USA.ORCID 0000-0002-5819-734X
B Bor1 The Forsyth Institute, Cambridge, MA, USA.
K Koyano4 Department of Integrative Biology and Physiology, University of California, Los Angeles, Los Angeles, CA, USA.
L Cen1 The Forsyth Institute, Cambridge, MA, USA.
X Xiao4 Department of Integrative Biology and Physiology, University of California, Los Angeles, Los Angeles, CA, USA.
W Shi1 The Forsyth Institute, Cambridge, MA, USA.
D T W Wong2 School of Dentistry, University of California, Los Angeles, Los Angeles, CA, USA.
University of California, Los Angeles · USHunan University of Traditional Chinese Medicine · CN

Funding

Domestication and characterization of TM7-the most elusive oral phylumR01DE023810 · NIDCR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Xuesong He, Jeffrey Scott McLean · 2014 to 2026
$6.6M
Making a quantum leap in plaque research with modern sciencesR01DE020102 · NIDCR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HE, XUESONG, MCLEAN, JEFFREY SCOTT · 2010 to 2020
$3.7M
Clinical Utility of Salivary ExRNA Biomarkers for Gastric Cancer DetectionUH3TR000923 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI WONG, DAVID T · 2015 to 2017
$2.7M
Studying the Protective Effects of Normal Oral FloraR01DE026186 · NIDCR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HE, XUESONG, MCLEAN, JEFFREY SCOTT · 2016 to 2020
$2.1M
Functional genetic variations in splicing regulationR01HG006264 · NHGRI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI XIAO, XINSHU GRACE · 2012 to 2016
$1.5M
Phenotypic, transcriptomic and pathogenic study of the first cultivated TM7 strainF32DE025548 · NIDCR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BOR, BATBILEG · 2015 to 2017
$111k
NCATS NIH HHS UH3 TR000923NHGRI NIH HHS R01 HG006264NIDCR NIH HHS F32 DE025548NIDCR NIH HHS R01 DE020102NIDCR NIH HHS R01 DE023810NIDCR NIH HHS R01 DE026186
6 · The paper itself

Abstract

Coevolution of the human host and its associated microbiota has led to sophisticated interactions to maintain a delicate homeostasis. Emerging evidence suggests that in addition to small molecules, peptides, and proteins, small regulatory noncoding RNAs (sRNAs) might play an important role in cross-domain interactions. In this study, we revealed the presence of diverse host transfer RNA-derived small RNAs (tsRNAs) among human salivary sRNAs. We selected 2 tsRNAs (tsRNA-000794 and tsRNA-020498) for further study based on their high sequence similarity to specific tRNAs from a group of Gram-negative oral bacteria, including Fusobacterium nucleatum, a key oral commensal and opportunistic pathogen. We showed that the presence of F. nucleatum triggers exosome-mediated release of tsRNA-000794 and tsRNA-020498 by human normal oral keratinocyte cells. Furthermore, both tsRNA candidates exerted a growth inhibition effect on F. nucleatum, likely through interference with bacterial protein biosynthesis, but did not affect the growth of Streptococcus mitis, a health-associated oral Gram-positive bacterium whose genome does not carry sequences bearing high similarity to either tsRNA. Our data provide the first line of evidence for the modulatory role of host-derived tsRNAs in the microbial-host interaction.

Indexed as

Host Microbial InteractionsFusobacterium nucleatumHumansKeratinocytesMouthRNA, Small UntranslatedRNA, TransferSalivaRNA, Small UntranslatedRNA, Transferantimicrobialscross-domain interactionsmicrobial-host interactionoral microbiomesRNAstsRNAs

Identifiers

PMID29702004
PMCPMC6151917
OpenAlexW2800279787

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.