Evidence map›Paper›PMID 29700266›Full record

ArticleScience (New York, N.Y.)2018

Field-deployable viral diagnostics using CRISPR-Cas13.

Cameron Myhrvold, Catherine A Freije, Jonathan S Gootenberg, Omar O Abudayyeh, Hayden C Metsky, Ann F Durbin, Max J Kellner, Amanda L Tan, Lauren M Paul, Leda A Parham and 14 more

Open access · greenAbstract readEvaluation Study
In one paragraph

Article in Science (New York, N.Y.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 620 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
620citing papers in PubMed, 1 pooled it
53.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

620 citing papers in PubMed, 1 synthesis or guideline pooled it, 1,417 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Article
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  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Attomolar Detection of HIV-1 With Label-Free RCA-rCRISPR on Smartphone.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  12. Article
  13. Point of Care Testing and Recombinase Polymerase Amplification.Journal of clinical laboratory analysis · 2026
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article

560 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

24 authors at 7 institutions in 3 countries.

Cameron MyhrvoldBroad Institute of the Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA 02142, USA. pardis@broadinstitute.org cmyhrvol@broadinstitute.org cfreije@broadinstitute.org.ORCID 0000-0002-8971-184X
Catherine A FreijeBroad Institute of the Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA 02142, USA. pardis@broadinstitute.org cmyhrvol@broadinstitute.org cfreije@broadinstitute.org.ORCID 0000-0002-1939-3102
Jonathan S GootenbergBroad Institute of the Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA 02142, USA.ORCID 0000-0003-2757-2175
Omar O AbudayyehBroad Institute of the Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA 02142, USA.ORCID 0000-0002-7979-3220
Hayden C MetskyBroad Institute of the Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA 02142, USA.ORCID 0000-0002-8871-2349
Ann F DurbinPh.D. Program in Virology, Division of Medical Sciences, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0002-7348-5243
Max J KellnerBroad Institute of the Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA 02142, USA.ORCID 0000-0002-5404-0628
Amanda L TanDepartment of Biological Sciences, Florida Gulf Coast University, Fort Myers, FL 33965, USA.ORCID 0000-0002-8279-6211
Lauren M PaulDepartment of Biological Sciences, Florida Gulf Coast University, Fort Myers, FL 33965, USA.ORCID 0000-0001-5503-7570
Leda A ParhamCentro de Investigaciones Genética, Instituto de Investigacion en Microbiologia, Universidad Nacional Autónoma de Honduras, Tegucigalpa, Honduras.ORCID 0000-0001-9572-974X
Kimberly F GarciaCentro de Investigaciones Genética, Instituto de Investigacion en Microbiologia, Universidad Nacional Autónoma de Honduras, Tegucigalpa, Honduras.ORCID 0000-0003-4230-6684
Kayla G BarnesBroad Institute of the Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA 02142, USA.
Bridget ChakBroad Institute of the Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA 02142, USA.ORCID 0000-0003-3589-4748
Adriano MondiniAraraquara Laboratory of Public Health, School of Pharmaceutical Sciences, São Paulo State University, São Paulo, Brazil.ORCID 0000-0002-5557-9721
Mauricio L NogueiraLaboratorio de Pesquisas em Virologia, Faculdade de Medicina de Sao Jose do Rio Preto, São Paulo, Brazil.ORCID 0000-0003-1102-2419
Sharon IsernDepartment of Biological Sciences, Florida Gulf Coast University, Fort Myers, FL 33965, USA.
Scott F MichaelDepartment of Biological Sciences, Florida Gulf Coast University, Fort Myers, FL 33965, USA.
Ivette LorenzanaCentro de Investigaciones Genética, Instituto de Investigacion en Microbiologia, Universidad Nacional Autónoma de Honduras, Tegucigalpa, Honduras.
Nathan L YozwiakBroad Institute of the Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA 02142, USA.ORCID 0000-0002-0138-7556
Bronwyn L MacInnisBroad Institute of the Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA 02142, USA.
Irene BoschInstitute for Medical Engineering and Science, MIT, Cambridge, MA 02139, USA.ORCID 0000-0003-1352-5888
Lee GehrkePh.D. Program in Virology, Division of Medical Sciences, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0002-9387-8212
Feng ZhangBroad Institute of the Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA 02142, USA.ORCID 0000-0003-0178-7995
Pardis C SabetiBroad Institute of the Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA 02142, USA. pardis@broadinstitute.org cmyhrvol@broadinstitute.org cfreije@broadinstitute.org.ORCID 0000-0002-9843-1890
Broad Institute · USFlorida Gulf Coast University · USNational Autonomous University of Honduras · HNHarvard University · USCentro Universitário de Araraquara · BRFaculdade de Medicina de São José do Rio Preto · BRIcahn School of Medicine at Mount Sinai · US

Funding

Viral Genomics: evolution, spread, and host interactionsU19AI110818 · NIAID · BROAD INSTITUTE, INC. · PI NEAFSEY, DANIEL E · 2014 to 2024
$66.5M
Programmable RNA-targeting toolsR01HG009761 · NHGRI · BROAD INSTITUTE, INC. · PI ZHANG, FENG · 2017 to 2024
$7.5M
Exploration of Diverse Mobile Genetic Elements for Precision Genome ManipulationDP1HL141201 · NHLBI · BROAD INSTITUTE, INC. · PI ZHANG, FENG · 2017 to 2021
$6.2M
Massively-parallel functional interrogation of psychiatric geneticsR01MH110049 · NIMH · BROAD INSTITUTE, INC. · PI ZHANG, FENG · 2015 to 2019
$5.5M
Design of a human monoclonal antibody-informed dengue vaccineR01AI099210 · NIAID · FLORIDA GULF COAST UNIVERSITY · PI ISERN, SHARON · 2013 to 2016
$1.7M
MMDx: A rapid multiplexed matrix code diagnostic for real time epidemiologyR33AI100190 · NIAID · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GEHRKE, LEE · 2014 to 2016
$1.6M
MMDx: A rapid multiplexed matrix code diagnostic for real time epidemiologyR21AI100190 · NIAID · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GEHRKE, LEE · 2012 to 2013
$436k
Characterization of a novel RNA-guided endoRNAse and applications towards genome-wide screening for non-coding RNA roles in melanoma resistanceF30CA210382 · NCI · HARVARD MEDICAL SCHOOL · PI ABUDAYYEH, OMAR O · 2016 to 2018
$78k
NCI NIH HHS F30 CA210382NHGRI NIH HHS R01 HG009761NHLBI NIH HHS DP1 HL141201NIAID NIH HHS R01 AI099210NIAID NIH HHS R21 AI100190NIAID NIH HHS R33 AI100190NIAID NIH HHS U19 AI110818NIMH NIH HHS R01 MH110049
6 · The paper itself

Abstract

Mitigating global infectious disease requires diagnostic tools that are sensitive, specific, and rapidly field deployable. In this study, we demonstrate that the Cas13-based SHERLOCK (specific high-sensitivity enzymatic reporter unlocking) platform can detect Zika virus (ZIKV) and dengue virus (DENV) in patient samples at concentrations as low as 1 copy per microliter. We developed HUDSON (heating unextracted diagnostic samples to obliterate nucleases), a protocol that pairs with SHERLOCK for viral detection directly from bodily fluids, enabling instrument-free DENV detection directly from patient samples in <2 hours. We further demonstrate that SHERLOCK can distinguish the four DENV serotypes, as well as region-specific strains of ZIKV from the 2015-2016 pandemic. Finally, we report the rapid (<1 week) design and testing of instrument-free assays to detect clinically relevant viral single-nucleotide polymorphisms.

Indexed as

Enzyme AssaysAdaptation, PhysiologicalBacterial ProteinsCRISPR-Associated ProteinsDengueDengue VirusEndonucleasesHumansMicrocephalyPolymorphism, Single NucleotideRNA, ViralZika VirusZika Virus InfectionBacterial ProteinsCRISPR-Associated ProteinsEndonucleasesRNA, Viral

Identifiers

PMID29700266
PMCPMC6197056
OpenAlexW2800905921

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.