Evidence map›Paper›PMID 29699581›Full record

ArticleVirology journal2018

Genotypic characterization of rotavirus in children under 5 years circulating in Côte D'Ivoire from 2010 to 2013.

Catherine Boni-Cisse, Sindou Meite, Alice Britoh Mlan, Flore Zaba, Rebecca N'Guessan, Nicaise Aka Lepri, Bélinda Lartey

Open access · goldAbstract read
In one paragraph

Article in Virology journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 2 pooled it
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 2 syntheses or guidelines pooled it, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Catherine Boni-CisseUFR des Sciences Médicales, Département de Microbiologie, Université Félix Houphouët Boigny, Abidjan, Côte d'Ivoire. bonicatc@yahoo.fr.
Sindou MeiteUFR des Sciences Médicales, Département de Microbiologie, Université Félix Houphouët Boigny, Abidjan, Côte d'Ivoire.
Alice Britoh MlanUFR des Sciences Médicales, Département de Microbiologie, Université Félix Houphouët Boigny, Abidjan, Côte d'Ivoire.
Flore ZabaLaboratory of Sentinel Site Surveillance of Paediatric Bacterial Meningitis and Rotavirus Diarrhoea CHU Yopougon, Abidjan, Côte d'Ivoire.
Rebecca N'GuessanPaediatric Service CHU Yopougon, Abidjan, Côte d'Ivoire.
Nicaise Aka LepriExpanded Program on Immunization of Côte d'Ivoire, Abidjan, Côte d'Ivoire.
Bélinda LarteyNMIMR West African Regional Rotavirus Reference Laboratory, Accra, Ghana.
Centre Hospitalier Universitaire de Yopougon · CIUniversité Félix Houphouët-Boigny · CISociété de Développement des Forêts · CI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRotavirus infection is the most common cause of severe gastroenteritis in children under five years of age in both developed and developing countries. The World Health Organisation (WHO) recommends the surveillance of rotavirus strains prior to vaccine introduction in all applicable countries. The objective of this study was to describe the epidemiological characteristics as well as to determine the circulating genotypes of rotaviruses in Côte d'Ivoire prior to vaccine introduction.

methodsThe study included children under five years of age who met the inclusion criteria after informed consent had been sort from their parents or guardians. Rotavirus VP6 antigens were detected for each stool sample using Enzyme Immunoassay (EIA). Genotyping of positive EIA samples was performed by reverse-transcriptase-PCR (RT-PCR) assays.

resultsA total of 684 children were recruited. Children aged between 6 and 11 months were the most represented with 34%. Rotavirus VP6 antigens were found in 27.1% (186/684) of samples tested. Commonly detected G genotypes included G12 (46.6% (82/176) and G1 (13.1% (23/176) whilst P[8] (49.8% (91/183) was the most predominant P genotype. Rotavirus G12P[8] was the most predominant strain circulating in Côte d'Ivoire within the period of study and constituted 26.6% of all strains detected.

conclusionThe monitoring of circulating strains will help guide decision-makers in the choice of vaccine. Genotypic variability of circulating rotavirus strains over the years implies there is a need for continuous rotavirus strain surveillance even after vaccine introduction.

Indexed as

GenotypeAntigens, ViralCapsid ProteinsChild, PreschoolCote d'IvoireFecesFemaleGastroenteritisHumansInfantInfant, NewbornMaleMolecular EpidemiologyRNA, ViralRotavirusAntigens, ViralCapsid ProteinsRNA, ViralCôte d’IvoireGenotypeRotavirusSurveillance

Identifiers

PMID29699581
PMCPMC5922014
OpenAlexW2799498329

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.