Evidence map›Paper›PMID 29699487›Full record

ArticleBMC plant biology2018

The parthenocarpic gene Pat-k is generated by a natural mutation of SlAGL6 affecting fruit development in tomato (Solanum lycopersicum L.).

Rihito Takisawa, Tetsuya Nakazaki, Tsukasa Nunome, Hiroyuki Fukuoka, Keiko Kataoka, Hiroki Saito, Tsuyoshi Habu, Akira Kitajima

Abstract read
In one paragraph

Article in BMC plant biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
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  6. Review
  7. The mutation of CaCKI1 causes seedless fruits in chili pepper (Capsicum annuum).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Review
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  16. Dissection of complex traits of tomato in the post-genome era.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Rihito TakisawaGraduate School of Agriculture, Kyoto University, Kizugawa, 619-0218, Japan. takisawa@kais.kyoto-u.ac.jp.ORCID http://orcid.org/0000-0002-8720-799X
Tetsuya NakazakiGraduate School of Agriculture, Kyoto University, Kizugawa, 619-0218, Japan.
Tsukasa NunomeNARO Institute of Vegetable and Floriculture Science, Tsu, 514-2392, Japan.
Hiroyuki FukuokaNARO Institute of Vegetable and Tea Science, Tsu, 514-2392, Japan.
Keiko KataokaGraduate School of Agriculture, Ehime University, Matsuyama, 790-8566, Japan.
Hiroki SaitoGraduate School of Agriculture, Kyoto University, Kizugawa, 619-0218, Japan.
Tsuyoshi HabuGraduate School of Agriculture, Ehime University, Matsuyama, 790-8566, Japan.
Akira KitajimaGraduate School of Agriculture, Kyoto University, Kizugawa, 619-0218, Japan.

Funding

Japan Society for the Promotion of Science 15K18639
6 · The paper itself

Abstract

backgroundParthenocarpy is a desired trait in tomato because it can overcome problems with fruit setting under unfavorable environmental conditions. A parthenocarpic tomato cultivar, 'MPK-1', with a parthenocarpic gene, Pat-k, exhibits stable parthenocarpy that produces few seeds. Because 'MPK-1' produces few seeds, seedlings are propagated inefficiently via cuttings. It was reported that Pat-k is located on chromosome 1. However, the gene had not been isolated and the relationship between the parthenocarpy and low seed set in 'MPK-1' remained unclear. In this study, we isolated Pat-k to clarify the relationship between parthenocarpy and low seed set in 'MPK-1'.

resultsUsing quantitative trait locus (QTL) analysis for parthenocarpy and seed production, we detected a major QTL for each trait on nearly the same region of the Pat-k locus on chromosome 1. To isolate Pat-k, we performed fine mapping using an F

conclusionsPat-k is identical to SlAGL6, and its down-regulation causes parthenocarpy and low seed set in 'MPK-1'. Moreover, down-regulation of Pat-k/SlAGL6 could cause abnormal ovule formation, leading to a reduction in the number of seeds.

Indexed as

Chromosome MappingFlowersFruitGenes, PlantGenome, PlantLod ScoreMutationParthenogenesisPolymorphism, Single NucleotideQuantitative Trait LociSeedsSequence Analysis, DNASolanum lycopersicumNumber of seedsOvuleParthenocarpyPat-kQTLTomato

Identifiers

PMID29699487
PMCPMC5921562

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.