Evidence map›Paper›PMID 29698924›Full record

Trial reportRedox biology2018

Integrative metabolomics and transcriptomics signatures of clinical tolerance to Plasmodium vivax reveal activation of innate cell immunity and T cell signaling.

Luiz G Gardinassi, Myriam Arévalo-Herrera, Sócrates Herrera, Regina J Cordy, ViLinh Tran, Matthew R Smith, Michelle S Johnson, Balu Chacko, Ken H Liu, Victor M Darley-Usmar and 5 more

Open access · goldAbstract readRandomized Controlled Trial
In one paragraph

Trial report in Redox biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
9.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 81 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Article
  6. Antiplasmodial evidence, host mitochondrial biology and possible mechanisms of action of a composite extract ofJournal of parasitic diseases : official organ of the Indian Society for Parasitology · 2024
    Article
  7. Review
  8. Review
  9. Article
  10. Ly6GResearch (Washington, D.C.) · 2024
    Article
  11. Advancing vaccine development againstFrontiers in pharmacology · 2024
    Review
  12. Article
  13. Article
  14. Diagnosis of cerebral malaria: Tools to reduceFrontiers in cellular and infection microbiology · 2023
    Review
  15. Article
  16. Review
  17. Review
  18. Review
  19. Multi-Omics Advancements towardsDiagnostics (Basel, Switzerland) · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 2 countries.

Luiz G GardinassiDepartment of Medicine, School of Medicine, Emory University, 615 Michael Street, Atlanta, GA 30322-1047, USA.
Myriam Arévalo-HerreraMalaria Vaccine and Drug Development Center (MVDC), Cali, Colombia; Faculty of Health, Universidad del Valle, Cali, Colombia.
Sócrates HerreraMalaria Vaccine and Drug Development Center (MVDC), Cali, Colombia; Caucaseco Scientific Research Center, Cali, Colombia.
Regina J CordyInternational Center for Malaria Research, Education and Development, Emory Vaccine Center, Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA.
ViLinh TranDepartment of Medicine, School of Medicine, Emory University, 615 Michael Street, Atlanta, GA 30322-1047, USA.
Matthew R SmithDepartment of Medicine, School of Medicine, Emory University, 615 Michael Street, Atlanta, GA 30322-1047, USA.
Michelle S JohnsonDepartment of Pathology and Mitochondrial Medicine Laboratory, University of Alabama at Birmingham, Birmingham, AL, USA.
Balu ChackoDepartment of Pathology and Mitochondrial Medicine Laboratory, University of Alabama at Birmingham, Birmingham, AL, USA.
Ken H LiuDepartment of Medicine, School of Medicine, Emory University, 615 Michael Street, Atlanta, GA 30322-1047, USA.
Victor M Darley-UsmarDepartment of Pathology and Mitochondrial Medicine Laboratory, University of Alabama at Birmingham, Birmingham, AL, USA.
Young-Mi GoDepartment of Medicine, School of Medicine, Emory University, 615 Michael Street, Atlanta, GA 30322-1047, USA.
MaHPIC Consortium
Dean P JonesDepartment of Medicine, School of Medicine, Emory University, 615 Michael Street, Atlanta, GA 30322-1047, USA.
Mary R GalinskiDepartment of Medicine, School of Medicine, Emory University, 615 Michael Street, Atlanta, GA 30322-1047, USA; International Center for Malaria Research, Education and Development, Emory Vaccine Center, Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA.
Shuzhao LiDepartment of Medicine, School of Medicine, Emory University, 615 Michael Street, Atlanta, GA 30322-1047, USA. Electronic address: shuzhao.li@gmail.com.
Emory University · USUniversity of Alabama at Birmingham · USCaucaseco Scientific Research Center · CO

Funding

Sex hormones and arthritis in a long lived animal modelP30AG050886 · NIA · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI DAVID B ALLISON · 2015 to 2026
$11.3M
Graduate Training in the Pharmacological StudiesT32GM008602 · NIGMS · EMORY UNIVERSITY · PI HALL, RANDY A. · 1996 to 2021
$5.1M
Development of a P. vivax immunization and sporozoite challenge model for humanR01HL086488 · NHLBI · MALARIA VACCINE DEVELOPMENT CENTER · PI HERRERA, SOCRATES · 2008 to 2011
$1.2M
Orbitrap Elite/H-ESI BundleS10OD018006 · OD · EMORY UNIVERSITY · PI JONES, DEAN PAUL · 2014 to 2014
$600k
Multiscale, multifactorial immune networks as a web serviceUH2AI132345 · NIAID · EMORY UNIVERSITY · PI LI, SHUZHAO · 2017 to 2018
$423k
NHLBI NIH HHS R01 HL086488NIAID NIH HHS HHSN272201200031CNIAID NIH HHS UH2 AI132345NIA NIH HHS P30 AG050886NIGMS NIH HHS T32 GM008602NIH HHS S10 OD018006
6 · The paper itself

Abstract

Almost invariably, humans become ill during primary infections with malaria parasites which is a pathology associated with oxidative stress and perturbations in metabolism. Importantly, repetitive exposure to Plasmodium results in asymptomatic infections, which is a condition defined as clinical tolerance. Integration of transcriptomics and metabolomics data provides a powerful way to investigate complex disease processes involving oxidative stress, energy metabolism and immune cell activation. We used metabolomics and transcriptomics to investigate the different clinical outcomes in a P. vivax controlled human malaria infection trial. At baseline, the naïve and semi-immune subjects differed in the expression of interferon related genes, neutrophil and B cell signatures that progressed with distinct kinetics after infection. Metabolomics data indicated differences in amino acid pathways and lipid metabolism between the two groups. Top pathways during the course of infection included methionine and cysteine metabolism, fatty acid metabolism and urea cycle. There is also evidence for the activation of lipoxygenase, cyclooxygenase and non-specific lipid peroxidation products in the semi-immune group. The integration of transcriptomics and metabolomics revealed concerted molecular events triggered by the infection, notably involving platelet activation, innate immunity and T cell signaling. Additional experiment confirmed that the metabolites associated with platelet activation genes were indeed enriched in the platelet metabolome.

Indexed as

AdolescentAdultBlood PlateletsFemaleHumansImmune ToleranceImmunity, InnateLipid MetabolismMalariaMalaria VaccinesMaleMetabolomeMiddle AgedNeutrophilsPlasmodium vivaxPlatelet ActivationMalaria VaccinesImmunityIntegrationMalariaMetabolomicsPlasmodium vivaxPlateletsToleranceTranscriptomics

Identifiers

PMID29698924
PMCPMC6007173
OpenAlexW2796888926

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.