Evidence map›Paper›PMID 29698394›Full record

ArticlePLoS computational biology2018

Organization of the core respiratory network: Insights from optogenetic and modeling studies.

Jessica Ausborn, Hidehiko Koizumi, William H Barnett, Tibin T John, Ruli Zhang, Yaroslav I Molkov, Jeffrey C Smith, Ilya A Rybak

Abstract read
In one paragraph

Article in PLoS computational biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

  1. Article
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  5. Review
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  8. GABAergic/Glycinergic and Glutamatergic Neurons Mediate Distinct Neurodevelopmental Phenotypes ofThe Journal of neuroscience : the official journal of the Society for Neuroscience · 2024
    Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Microcircuit Synchronization and Heavy-Tailed Synaptic Weight Distribution Augment preBötzinger Complex Bursting Dynamics.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2023
    Article
  14. Article
  15. Review
  16. Article
  17. Inspiratory rhythm generation is stabilized byJournal of neurophysiology · 2022
    Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jessica AusbornDepartment of Neurobiology and Anatomy, Drexel University College of Medicine, Philadelphia, United States of America.ORCID 0000-0003-4500-5131
Hidehiko KoizumiCellular and Systems Neurobiology Section, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, United States of America.
William H BarnettDepartment of Mathematics and Statistics, Georgia State University, Atlanta, United States of America.ORCID 0000-0003-2300-666X
Tibin T JohnCellular and Systems Neurobiology Section, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, United States of America.
Ruli ZhangCellular and Systems Neurobiology Section, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, United States of America.
Yaroslav I MolkovDepartment of Mathematics and Statistics, Georgia State University, Atlanta, United States of America.ORCID 0000-0002-0862-1974
Jeffrey C SmithCellular and Systems Neurobiology Section, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, United States of America.
Ilya A RybakDepartment of Neurobiology and Anatomy, Drexel University College of Medicine, Philadelphia, United States of America.ORCID 0000-0003-3461-349X

Funding

UCD Mutant Mouse Regional Resource CenterU42OD012210 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI KC KENT LLOYD · 2012 to 2026
$29.2M
Multi-Scale Models of Neural Mechanisms Controlling Breathing in MammalsZIANS003108 · NINDS · NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE · PI SMITH, JEFFREY C · 2009 to 2023
$7.5M
Spinal cord neural circuits for left-right and flexor-extensor coordinationR01NS090919 · NINDS · DREXEL UNIVERSITY · PI GOULDING, MARTYN D, KIEHN, OLE · 2014 to 2018
$3.1M
Multiscale Model of Neural Control of BreathingR01NS069220 · NINDS · DREXEL UNIVERSITY · PI BEN-TAL, ALONA, DICK, THOMAS E · 2010 to 2014
$2.9M
Modeling Brainstem Inflammation's Role in Systemic Dysfunction during SepsisU01EB021960 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI DICK, THOMAS E · 2017 to 2020
$2.6M
CRCNS: Modeling the respiratory-sympathetic coupling in neurogenic hypertensionR01AT008632 · NCCIH · INDIANA UNIVERSITY INDIANAPOLIS · PI MOLKOV, YAROSLAV · 2015 to 2019
$1.4M
NCCIH NIH HHS R01 AT008632NIBIB NIH HHS U01 EB021960NIH HHS R01 AT008632NIH HHS R01 NS069220NIH HHS U01 EB021960NIH HHS U42 OD012210NINDS NIH HHS R01 NS069220NINDS NIH HHS R01 NS090919
6 · The paper itself

Abstract

The circuit organization within the mammalian brainstem respiratory network, specifically within and between the pre-Bötzinger (pre-BötC) and Bötzinger (BötC) complexes, and the roles of these circuits in respiratory pattern generation are continuously debated. We address these issues with a combination of optogenetic experiments and modeling studies. We used transgenic mice expressing channelrhodopsin-2 under the VGAT-promoter to investigate perturbations of respiratory circuit activity by site-specific photostimulation of inhibitory neurons within the pre-BötC or BötC. The stimulation effects were dependent on the intensity and phase of the photostimulation. Specifically: (1) Low intensity (≤ 1.0 mW) pulses delivered to the pre-BötC during inspiration did not terminate activity, whereas stronger stimulations (≥ 2.0 mW) terminated inspiration. (2) When the pre-BötC stimulation ended in or was applied during expiration, rebound activation of inspiration occurred after a fixed latency. (3) Relatively weak sustained stimulation (20 Hz, 0.5-2.0 mW) of pre-BötC inhibitory neurons increased respiratory frequency, while a further increase of stimulus intensity (> 3.0 mW) reduced frequency and finally (≥ 5.0 mW) terminated respiratory oscillations. (4) Single pulses (0.2-5.0 s) applied to the BötC inhibited rhythmic activity for the duration of the stimulation. (5) Sustained stimulation (20 Hz, 0.5-3.0 mW) of the BötC reduced respiratory frequency and finally led to apnea. We have revised our computational model of pre-BötC and BötC microcircuits by incorporating an additional population of post-inspiratory inhibitory neurons in the pre-BötC that interacts with other neurons in the network. This model was able to reproduce the above experimental findings as well as previously published results of optogenetic activation of pre-BötC or BötC neurons obtained by other laboratories. The proposed organization of pre-BötC and BötC circuits leads to testable predictions about their specific roles in respiratory pattern generation and provides important insights into key circuit interactions operating within brainstem respiratory networks.

Indexed as

Models, NeurologicalAnimalsCentral Pattern GeneratorsComputational BiologyComputer SimulationConnectomeElectrophysiological PhenomenaMiceMice, TransgenicOptogeneticsPhotic StimulationRespiratory CenterRespiratory Physiological PhenomenaVesicular Inhibitory Amino Acid Transport ProteinsVesicular Inhibitory Amino Acid Transport ProteinsViaat protein, mouse

Identifiers

PMID29698394
PMCPMC5940240

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.