ArticleScientific reports2018
Identification of QTN and candidate genes for Salinity Tolerance at the Germination and Seedling Stages in Rice by Genome-Wide Association Analyses.
Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.
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41 citing papers in PubMed, 91 citations in OpenAlex.
- Lhca4 Maintaining Photochemical Efficiency and ROS Homeostasis Contributes to Rice Salt Tolerance.Rice (New York, N.Y.) · 2026Article
- Divergent Roles ofPlants (Basel, Switzerland) · 2026Article
- Genome-wide association analysis of salinity tolerance-related loci in bread wheat (Triticum aestivum L.) at the germination stage.BMC plant biology · 2026Article
- QTL mapping and haplotype analysis reveal candidate genes for seedling-stage salinity tolerance in rice.Frontiers in plant science · 2026Article
- Employing AlphaFold and TED to explore the structural impacts of stress-associated mutations in rice.Bioinformatics advances · 2026Article
- Genome-wide association mapping for salinity recovery of rice seedlings grown in hydroponic and field conditions.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025Article
- Genome-wide association study (GWAS) uncovers candidate genes linked to the germination performance of bread wheat (Triticum aestivum L.) under salt stress.BMC genomics · 2025Article
- MIKC-type MADS-box transcription factor OsMADS31 positively regulates salinity tolerance in rice.Frontiers in plant science · 2025Article
- Genomic regions associated with flag leaf and panicle architecture in rice (Oryza sativa L.).BMC genomics · 2024Article
- Candidate genes for alkali tolerance identified by genome-wide association study at the seedling stage in rice (Oryza sativa L.).Scientific reports · 2024Article
- Screening of Rice (Plants (Basel, Switzerland) · 2024Article
- Integration of genome-wide association studies reveal loci associated with salt tolerance score of rice at the seedling stage.Journal of applied genetics · 2023Article
- Improvement of Salinity Tolerance in Water-Saving and Drought-Resistance Rice (WDR).International journal of molecular sciences · 2023Review
- Identification of quantitative trait loci controlling nitrogen use efficiency-related traits in rice at the seedling stage under salt condition by genome-wide association study.Frontiers in plant science · 2023Article
- Genome-Wide Association Study (GWAS) and genome prediction of seedling salt tolerance in bread wheat (Triticum aestivum L.).BMC plant biology · 2022Article
- Genome-Wide Association Study of Salt Tolerance-Related Traits during Germination and Seedling Development in anInternational journal of molecular sciences · 2022Article
- Salinity stress tolerance and omics approaches: revisiting the progress and achievements in major cereal crops.Heredity · 2022Review
- A Review of Integrative Omic Approaches for Understanding Rice Salt Response Mechanisms.Plants (Basel, Switzerland) · 2022Review
- Integrated Multi-Omics Perspective to Strengthen the Understanding of Salt Tolerance in Rice.International journal of molecular sciences · 2022Review
- High-LD SNP markers exhibiting pleiotropic effects on salt tolerance at germination and seedlings stages in spring wheat.Plant molecular biology · 2022Article
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Authors and funding
8 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
To facilitate developing rice varieties tolerant to salt stress, a panel of 208 rice mini-core accessions collected from 25 countries were evaluated for 13 traits associated with salt tolerance (ST) at the germination and seedling stages. The rice panel showed tremendous variation for all measured ST traits and eight accessions showing high levels of ST at either and/or both the germination and seedling stages. Using 395,553 SNP markers covering ~372 Mb of the rice genome and multi-locus mixed linear models, 20 QTN associated with 11 ST traits were identified by GWAS, including 6 QTN affecting ST at the germination stage and 14 QTN for ST at the seedling stage. The integration of bioinformatic with haplotype analyses for the ST QTN lets us identify 22 candidate genes for nine important ST QTN (qGR3, qSNK1, qSNK12, qSNC1, qSNC6, qRNK2, qSDW9a, qSST5 and qSST9). These candidate genes included three known ST genes (SKC1, OsTZF1 and OsEATB) for QTN qSNK1 qSST5 and qSST9. Candidate genes showed significant phenotypic differences in ST traits were detected between or among 2-4 major haplotypes. Thus, our results provided useful materials and genetic information for improving rice ST in future breeding and for molecular dissection of ST in rice.
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