Evidence map›Paper›PMID 29695831›Full record

ArticleScientific reports2018

Deletion at the 5'-end of Estonian ASFV strains associated with an attenuated phenotype.

Laura Zani, Jan Hendrik Forth, Leonie Forth, Imbi Nurmoja, Simone Leidenberger, Julia Henke, Jolene Carlson, Christiane Breidenstein, Arvo Viltrop, Dirk Höper and 3 more

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 108 papers.

0numbers the graph read from it
0cells of the map it votes in
108citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

108 citing papers in PubMed.

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  15. African swine fever virus biotype identification tool.Microbiology resource announcements · 2025
    Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

48 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Laura ZaniFriedrich-Loeffler-Institut, Suedufer 10, 17493, Greifswald - Insel Riems, Germany.
Jan Hendrik ForthFriedrich-Loeffler-Institut, Suedufer 10, 17493, Greifswald - Insel Riems, Germany.
Leonie ForthFriedrich-Loeffler-Institut, Suedufer 10, 17493, Greifswald - Insel Riems, Germany.
Imbi NurmojaEstonian Veterinary and Food Laboratory, Kreutzwaldi 30, 51006, Tartu, Estonia.
Simone LeidenbergerFriedrich-Loeffler-Institut, Suedufer 10, 17493, Greifswald - Insel Riems, Germany.
Julia HenkeFriedrich-Loeffler-Institut, Suedufer 10, 17493, Greifswald - Insel Riems, Germany.
Jolene CarlsonFriedrich-Loeffler-Institut, Suedufer 10, 17493, Greifswald - Insel Riems, Germany.
Christiane BreidensteinFriedrich-Loeffler-Institut, Suedufer 10, 17493, Greifswald - Insel Riems, Germany.
Arvo ViltropInstitute of Veterinary Medicine and Animal Sciences, Estonian University of Life Sciences, Kreutzwaldi 62, 51014, Tartu, Estonia.
Dirk HöperFriedrich-Loeffler-Institut, Suedufer 10, 17493, Greifswald - Insel Riems, Germany.ORCID 0000-0001-8408-2274
Carola Sauter-LouisFriedrich-Loeffler-Institut, Suedufer 10, 17493, Greifswald - Insel Riems, Germany.
Martin BeerFriedrich-Loeffler-Institut, Suedufer 10, 17493, Greifswald - Insel Riems, Germany.
Sandra BlomeFriedrich-Loeffler-Institut, Suedufer 10, 17493, Greifswald - Insel Riems, Germany. sandra.blome@fli.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

African swine fever (ASF) was introduced into the Eastern European Union in 2014 and led to considerable mortality among wild boar. In contrast, unexpected high antibody prevalence was reported in hunted wild boar in north-eastern Estonia. One of the causative virus strains was recently characterized. While it still showed rather high virulence in the majority of experimentally infected animals, one animal survived and recovered completely. Here, we report on the follow-up characterization of the isolate obtained from the survivor in the acute phase of infection. As a first step, three in vivo experiments were performed with different types of pigs: twelve minipigs (trial A), five domestic pigs (trial B), and five wild boar (trial C) were inoculated. 75% of the minipigs and all domestic pigs recovered after an acute course of disease. However, all wild boar succumbed to infection within 17 days. Representative samples were sequenced using NGS-technologies, and whole-genomes were compared to ASFV "Georgia 2007/1". The alignments indicated a deletion of 14560 base pairs at the 5' end, and genome reorganization by duplication. The characteristic deletion was confirmed in all trial samples and local field samples. In conclusion, an ASFV variant was found in Estonia that showed reduced virulence.

Indexed as

African Swine FeverAfrican Swine Fever VirusAnimalsCell LineEstoniaGene DeletionLeukocytes, MononuclearPhenotypeSequence DeletionSus scrofaSwineSwine, MiniatureVirulence

Identifiers

PMID29695831
PMCPMC5916933

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.