Evidence map›Paper›PMID 29695788›Full record

ArticleNature cell biology2018

TFAP2C regulates transcription in human naive pluripotency by opening enhancers.

William A Pastor, Wanlu Liu, Di Chen, Jamie Ho, Rachel Kim, Timothy J Hunt, Anastasia Lukianchikov, Xiaodong Liu, Jose M Polo, Steven E Jacobsen and 1 more

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Nature cell biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 129 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
129citing papers in PubMed, 1 pooled it
8.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

129 citing papers in PubMed, 1 synthesis or guideline pooled it, 209 citations in OpenAlex.

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69 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

William A PastorDepartment of Molecular, Cell and Developmental Biology, University of California Los Angeles, Los Angeles, CA, USA.
Wanlu LiuDepartment of Molecular, Cell and Developmental Biology, University of California Los Angeles, Los Angeles, CA, USA.
Di ChenDepartment of Molecular, Cell and Developmental Biology, University of California Los Angeles, Los Angeles, CA, USA.
Jamie HoDepartment of Molecular, Cell and Developmental Biology, University of California Los Angeles, Los Angeles, CA, USA.
Rachel KimDepartment of Molecular, Cell and Developmental Biology, University of California Los Angeles, Los Angeles, CA, USA.
Timothy J HuntDepartment of Molecular, Cell and Developmental Biology, University of California Los Angeles, Los Angeles, CA, USA.
Anastasia LukianchikovDepartment of Molecular, Cell and Developmental Biology, University of California Los Angeles, Los Angeles, CA, USA.
Xiaodong LiuDepartment of Anatomy and Developmental Biology, Monash University, Clayton, Victoria, Australia.
Jose M PoloDepartment of Anatomy and Developmental Biology, Monash University, Clayton, Victoria, Australia.ORCID http://orcid.org/0000-0002-2531-778X
Steven E JacobsenDepartment of Molecular, Cell and Developmental Biology, University of California Los Angeles, Los Angeles, CA, USA. jacobsen@ucla.edu.ORCID http://orcid.org/0000-0001-9483-138X
Amander T ClarkDepartment of Molecular, Cell and Developmental Biology, University of California Los Angeles, Los Angeles, CA, USA. clarka@ucla.edu.ORCID http://orcid.org/0000-0003-2483-3982
University of California, Los Angeles · USAustralian Regenerative Medicine Institute · AUHoward Hughes Medical Institute · US

Funding

Differentiating embryonic stem cells into developing germ lineR01HD079546 · NICHD · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CLARK, AMANDER · 2015 to 2024
$3.7M
NICHD NIH HHS R01 HD079546
6 · The paper itself

Abstract

Naive and primed pluripotent human embryonic stem cells bear transcriptional similarity to pre- and post-implantation epiblast and thus constitute a developmental model for understanding the pluripotent stages in human embryo development. To identify new transcription factors that differentially regulate the unique pluripotent stages, we mapped open chromatin using ATAC-seq and found enrichment of the activator protein-2 (AP2) transcription factor binding motif at naive-specific open chromatin. We determined that the AP2 family member TFAP2C is upregulated during primed to naive reversion and becomes widespread at naive-specific enhancers. TFAP2C functions to maintain pluripotency and repress neuroectodermal differentiation during the transition from primed to naive by facilitating the opening of enhancers proximal to pluripotency factors. Additionally, we identify a previously undiscovered naive-specific POU5F1 (OCT4) enhancer enriched for TFAP2C binding. Taken together, TFAP2C establishes and maintains naive human pluripotency and regulates OCT4 expression by mechanisms that are distinct from mouse.

Indexed as

Chromatin Assembly and DisassemblyEnhancer Elements, GeneticTranscription, GeneticAnimalsBinding SitesCell LineageCells, CulturedChromatinGene Expression Regulation, DevelopmentalHuman Embryonic Stem CellsHumansMiceMouse Embryonic Stem CellsNucleotide MotifsOctamer Transcription Factor-3PhenotypeChromatinOctamer Transcription Factor-3POU5F1 protein, humanTFAP2C protein, humanTfap2c protein, mouseTranscription Factor AP-2

Identifiers

PMID29695788
PMCPMC5926822
OpenAlexW2800074119

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.