Evidence map›Paper›PMID 29695435›Full record

ArticleJournal of virology2018

Critical Role of the Human T-Cell Leukemia Virus Type 1 Capsid N-Terminal Domain for Gag-Gag Interactions and Virus Particle Assembly.

Jessica L Martin, Luiza M Mendonça, Rachel Marusinec, Jennifer Zuczek, Isaac Angert, Ruth J Blower, Joachim D Mueller, Juan R Perilla, Wei Zhang, Louis M Mansky

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
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  6. Article
  7. Review
  8. Article
  9. Review
  10. Molecular Biology and Diversification of Human Retroviruses.Frontiers in virology (Lausanne, Switzerland) · 2022
    Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. All-atom virus simulations.Current opinion in virology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Jessica L MartinInstitute for Molecular Virology, University of Minnesota, Minneapolis, Minnesota, USA.
Luiza M MendonçaInstitute for Molecular Virology, University of Minnesota, Minneapolis, Minnesota, USA.
Rachel MarusinecInstitute for Molecular Virology, University of Minnesota, Minneapolis, Minnesota, USA.
Jennifer ZuczekDepartment of Chemistry & Biochemistry, University of Delaware, Newark, Delaware, USA.
Isaac AngertInstitute for Molecular Virology, University of Minnesota, Minneapolis, Minnesota, USA.
Ruth J BlowerInstitute for Molecular Virology, University of Minnesota, Minneapolis, Minnesota, USA.
Joachim D MuellerInstitute for Molecular Virology, University of Minnesota, Minneapolis, Minnesota, USA.
Juan R PerillaDepartment of Chemistry & Biochemistry, University of Delaware, Newark, Delaware, USA.
Wei ZhangInstitute for Molecular Virology, University of Minnesota, Minneapolis, Minnesota, USA.
Louis M ManskyInstitute for Molecular Virology, University of Minnesota, Minneapolis, Minnesota, USA mansky@umn.edu.ORCID https://orcid.org/0000-0003-2391-1061
University of Minnesota · USUniversity of Delaware · US

Funding

X-Ray Core P50GM082251 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ENGELMAN, ALAN N. · 2007 to 2018
$48.1M
Training in PharmacoNeuroImmune Substance Abuse ResearchT32DA007097 · NIDA · UNIVERSITY OF MINNESOTA TWIN CITIES · PI MOLITOR, THOMAS WILLIAM · 1985 to 2021
$13.1M
Minnesota Training Program in VirologyT32AI083196 · NIAID · UNIVERSITY OF MINNESOTA · PI Louis M Mansky · 2010 to 2026
$3.2M
HTLV-1 Particle Analysis and Gag InteractionsR01GM098550 · NIGMS · UNIVERSITY OF MINNESOTA · PI MANSKY, LOUIS M. · 2012 to 2020
$3.1M
NIAID NIH HHS T32 AI083196NIDA NIH HHS T32 DA007097NIGMS NIH HHS P50 GM082251NIGMS NIH HHS R01 GM098550
6 · The paper itself

Abstract

The retroviral Gag protein is the main structural protein responsible for virus particle assembly and release. Like human immunodeficiency virus type 1 (HIV-1) Gag, human T-cell leukemia virus type 1 (HTLV-1) has a structurally conserved capsid (CA) domain, including a β-hairpin turn and a centralized coiled-coil-like structure of six α helices in the CA amino-terminal domain (NTD), as well as four α-helices in the CA carboxy-terminal domain (CTD). CA drives Gag oligomerization, which is critical for both immature Gag lattice formation and particle production. The HIV-1 CA CTD has previously been shown to be a primary determinant for CA-CA interactions, and while both the HTLV-1 CA NTD and CTD have been implicated in Gag-Gag interactions, our recent observations have implicated the HTLV-1 CA NTD as encoding key determinants that dictate particle morphology. Here, we have conducted alanine-scanning mutagenesis in the HTLV-1 CA NTD nucleotide-encoding sequences spanning the loop regions and amino acids at the beginning and ends of α-helices due to their structural dissimilarity from the HIV-1 CA NTD structure. We analyzed both Gag subcellular distribution and efficiency of particle production for these mutants. We discovered several important residues (i.e., M17, Q47/F48, and Y61). Modeling implicated that these residues reside at the dimer interface (i.e., M17 and Y61) or at the trimer interface (i.e., Q47/F48). Taken together, these observations highlight the critical role of the HTLV-1 CA NTD in Gag-Gag interactions and particle assembly, which is, to the best of our knowledge, in contrast to HIV-1 and other retroviruses.

Indexed as

Virus AssemblyCapsidCapsid Proteinsgag Gene Products, Human Immunodeficiency VirusGene Products, gagHeLa CellsHTLV-I InfectionsHumansHuman T-lymphotropic virus 1Models, MolecularMutationProtein DomainsVirionCapsid Proteinsgag Gene Products, Human Immunodeficiency VirusGene Products, gagp19 protein, Human T-lymphotropic virus 1deltaretrovirusGaglentivirusesmorphologyoligomerizationretrovirusvirus assembly

Identifiers

PMID29695435
PMCPMC6026748
OpenAlexW2801555573

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.