Evidence map›Paper›PMID 29693722›Full record

ArticleThe New phytologist2018

A fungal avirulence factor encoded in a highly plastic genomic region triggers partial resistance to septoria tritici blotch.

Lukas Meile, Daniel Croll, Patrick C Brunner, Clémence Plissonneau, Fanny E Hartmann, Bruce A McDonald, Andrea Sánchez-Vallet

Abstract read
In one paragraph

Article in The New phytologist, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Lukas MeilePlant Pathology, Institute of Integrative Biology, ETH Zürich, CH-8092, Zürich, Switzerland.
Daniel CrollLaboratory of Evolutionary Genetics, Institute of Biology, University of Neuchâtel, CH-2000, Neuchâtel, Switzerland.
Patrick C BrunnerPlant Pathology, Institute of Integrative Biology, ETH Zürich, CH-8092, Zürich, Switzerland.
Clémence PlissonneauPlant Pathology, Institute of Integrative Biology, ETH Zürich, CH-8092, Zürich, Switzerland.
Fanny E HartmannEcologie Systématique Evolution, Universite Paris-Sud, AgroParisTech, CNRS, Université Paris-Saclay, 91400, Orsay, France.
Bruce A McDonaldPlant Pathology, Institute of Integrative Biology, ETH Zürich, CH-8092, Zürich, Switzerland.
Andrea Sánchez-ValletPlant Pathology, Institute of Integrative Biology, ETH Zürich, CH-8092, Zürich, Switzerland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cultivar-strain specificity in the wheat-Zymoseptoria tritici pathosystem determines the infection outcome and is controlled by resistance genes on the host side, many of which have been identified. On the pathogen side, however, the molecular determinants of specificity remain largely unknown. We used genetic mapping, targeted gene disruption and allele swapping to characterise the recognition of the new avirulence factor Avr3D1. We then combined population genetic and comparative genomic analyses to characterise the evolutionary trajectory of Avr3D1. Avr3D1 is specifically recognised by wheat cultivars harbouring the Stb7 resistance gene, triggering a strong defence response without preventing pathogen infection and reproduction. Avr3D1 resides in a cluster of putative effector genes located in a genome region populated by independent transposable element insertions. The gene was present in all 132 investigated strains and is highly polymorphic, with 30 different protein variants identified. We demonstrated that specific amino acid substitutions in Avr3D1 led to evasion of recognition. These results demonstrate that quantitative resistance and gene-for-gene interactions are not mutually exclusive. Localising avirulence genes in highly plastic genomic regions probably facilitates accelerated evolution that enables escape from recognition by resistance proteins.

Indexed as

Disease ResistanceGenome, PlastidAmino Acid SequenceAscomycotaChromosomes, PlantFungal ProteinsMultigene FamilyPlant DiseasesPolymorphism, GeneticTriticumVirulenceVirulence FactorsFungal ProteinsVirulence Factorsavirulence factordiversifying selectionevasion of recognitiongene-for-gene interactionsgenome plasticityplant pathogenquantitative resistancetransposable elements

Identifiers

PMID29693722
PMCPMC6055703

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.