Evidence map›Paper›PMID 29693643›Full record

ArticleInternational journal of molecular sciences2018

Common microRNA⁻mRNA Interactions in Different Newcastle Disease Virus-Infected Chicken Embryonic Visceral Tissues.

Yan-Qing Jia, Xing-Long Wang, Xiang-Wei Wang, Chuan-Qi Yan, Chang-Jie Lv, Xiao-Qin Li, Zhi-Li Chu, Fathalrhman Eisa Addoma Adam, Sa Xiao, Shu-Xia Zhang and 1 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.2field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 26 citations in OpenAlex.

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  5. Molecular analysis of chickenJournal of animal science and technology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Yan-Qing JiaCollege of Veterinary Medicine, Northwest A&F University, Yangling 712100, China. yqjia1987@163.com.
Xing-Long WangCollege of Veterinary Medicine, Northwest A&F University, Yangling 712100, China. wxlong@nwsuaf.edu.cn.
Xiang-Wei WangCollege of Veterinary Medicine, Northwest A&F University, Yangling 712100, China. wxw2014hc@163.com.
Chuan-Qi YanCollege of Veterinary Medicine, Northwest A&F University, Yangling 712100, China. ycq875935701@163.com.
Chang-Jie LvCollege of Veterinary Medicine, Northwest A&F University, Yangling 712100, China. lcjandjt@163.com.
Xiao-Qin LiCollege of Veterinary Medicine, Northwest A&F University, Yangling 712100, China. L18584890329@163.com.
Zhi-Li ChuCollege of Veterinary Medicine, Northwest A&F University, Yangling 712100, China. zhilichu@nwafu.edu.cn.
Fathalrhman Eisa Addoma AdamCollege of Veterinary Medicine, Northwest A&F University, Yangling 712100, China. fathalrhmanaddoma@gmail.com.ORCID 0000-0002-3837-0838
Sa XiaoCollege of Veterinary Medicine, Northwest A&F University, Yangling 712100, China. saxiao@nwafu.edu.cn.
Shu-Xia ZhangCollege of Veterinary Medicine, Northwest A&F University, Yangling 712100, China. zhangshuxia316@163.com.
Zeng-Qi YangCollege of Veterinary Medicine, Northwest A&F University, Yangling 712100, China. yzq8162@163.com.ORCID 0000-0002-2441-0026
Northwest A&F University · CNUniversity of Nyala · SD

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To investigate the roles and explore the altered expression of microRNAs (miRNAs) and mRNAs in chicken embryos in response to Newcastle disease virus (NDV) infection, deep sequencing was performed. Then, a conjoint analysis of small RNA-seq and mRNA-seq was performed to screen interactional miRNA⁻mRNA pairs during NDV infection. In total, 15 and 17 up- and downregulated miRNAs were identified that potentially targeted 4279 and 6080 mRNAs in NDV-infected chicken embryonic tissues, respectively; in addition, 595 upregulated and 480 downregulated mRNAs were identified. The conjoint analysis of the obtained data identified 1069 miRNA⁻mRNA pairs. Among these pairs, 130 pairs were related to immune or inflammatory responses. The relationship between gga-miR-203a and its target transglutaminase 2 (TGM2) was confirmed using a dual-luciferase reporter system and a real time quantitative polymerase chain reaction (RT-qPCR) assay. Overall, the discovery of miRNAs, mRNAs, and their potential pairing relationships, which may be involved in the regulation of NDV infection, will facilitate our understanding of the complex regulatory relationship between the host and the virus.

Indexed as

AnimalsChick EmbryoGTP-Binding ProteinsHEK293 CellsHumansMicroRNAsNewcastle DiseaseNewcastle disease virusProtein Glutamine gamma Glutamyltransferase 2RNA, MessengerTranscriptomeTransglutaminasesVisceraGTP-Binding ProteinsMicroRNAsProtein Glutamine gamma Glutamyltransferase 2RNA, MessengerTGM2 protein, humanTransglutaminaseschicken embryomicroRNAmRNANewcastle disease virusRNA-Seq

Identifiers

PMID29693643
PMCPMC5983721
OpenAlexW2802527843

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.