Evidence map›Paper›PMID 29693447›Full record

ArticleAmerican journal of physiology. Renal physiology2018

Chronic kidney disease, uremic milieu, and its effects on gut bacterial microbiota dysbiosis.

Lee D Chaves, Daniel I McSkimming, Mark A Bryniarski, Amanda M Honan, Sham Abyad, Shruthi A Thomas, Steven Wells, Michael Buck, Yijun Sun, Robert J Genco and 2 more

Abstract read
In one paragraph

Article in American journal of physiology. Renal physiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 56 citations in OpenAlex.

  1. Gut microbes · 2026
    Trial
  2. Article
  3. Microbes and GFR in Health and CKD in Mice.Journal of the American Society of Nephrology : JASN · 2026
    Article
  4. Article
  5. Microbiota and kidney disease: the road ahead.Nature reviews. Nephrology · 2025
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Frontiers in nutrition · 2023
    Article
  13. Article
  14. Article
  15. Review
  16. Review
  17. Gut Dysbiosis and Kidney Diseases.Frontiers in medicine · 2022
    Review
  18. Uremic Toxin-ProducingFrontiers in cellular and infection microbiology · 2022
    Article
  19. Frontiers in immunology · 2022
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Lee D ChavesDepartment of Internal Medicine, Jacobs School of Medicine and Biomedical Sciences, University at Buffalo , Buffalo, New York.
Daniel I McSkimmingGenome, Environment, and Microbiome Community of Excellence, University at Buffalo , Buffalo, New York.
Mark A BryniarskiDepartment of Pharmaceutical Sciences, University at Buffalo School of Pharmacy and Pharmaceutical Sciences , Buffalo, New York.
Amanda M HonanDepartment of Internal Medicine, Jacobs School of Medicine and Biomedical Sciences, University at Buffalo , Buffalo, New York.
Sham AbyadDepartment of Internal Medicine, Jacobs School of Medicine and Biomedical Sciences, University at Buffalo , Buffalo, New York.
Shruthi A ThomasDepartment of Internal Medicine, Jacobs School of Medicine and Biomedical Sciences, University at Buffalo , Buffalo, New York.
Steven WellsDepartment of Internal Medicine, Jacobs School of Medicine and Biomedical Sciences, University at Buffalo , Buffalo, New York.
Michael BuckDepartment of Biochemistry, Jacobs School of Medicine and Biomedical Sciences, University at Buffalo , Buffalo, New York.
Yijun SunDepartment of Microbiology and Immunology, Jacobs School of Medicine and Biomedical Sciences, University at Buffalo , Buffalo, New York.
Robert J GencoDepartment of Oral Biology, Jacobs School of Medicine and Biomedical Sciences, University at Buffalo , Buffalo, New York.
Richard J QuiggDepartment of Internal Medicine, Jacobs School of Medicine and Biomedical Sciences, University at Buffalo , Buffalo, New York.
Rabi YacoubDepartment of Internal Medicine, Jacobs School of Medicine and Biomedical Sciences, University at Buffalo , Buffalo, New York.
University at Buffalo, State University of New York · US

Funding

University of Buffalo Clinical and Translational Science Institute - Supplement SchulyerUL1TR001412 · NCATS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI MURPHY, TIMOTHY F · 2015 to 2024
$33.8M
Oral Microbiome and Periodontitis: A Prospective Study in Postmenopausal WomenR01DE024523 · NIDCR · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI WACTAWSKI-WENDE, JEAN · 2014 to 2018
$3.8M
Developing Advanced Algorithms to Address Major Computational Challenges in Current Microbiome ResearchR01AI125982 · NIAID · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI SUN, YIJUN · 2016 to 2018
$973k
NCATS NIH HHS UL1 TR001412NIAID NIH HHS R01 AI125982NIDCR NIH HHS R01 DE024523
6 · The paper itself

Abstract

Several lines of evidence suggest that gut bacterial microbiota is altered in patients with chronic kidney disease (CKD), though the mechanism of which this dysbiosis takes place is not well understood. Recent studies delineated changes in gut microbiota in both CKD patients and experimental animal models using microarray chips. We present 16S ribosomal RNA gene sequencing of both stool pellets and small bowel contents of C57BL/6J mice that underwent a remnant kidney model and establish that changes in microbiota take place in the early gastrointestinal tract. Increased intestinal urea concentration has been hypothesized as a leading contributor to dysbiotic changes in CKD. We show that urea transporters (UT)-A and UT-B mRNA are both expressed throughout the whole gastrointestinal tract. The noted increase in intestinal urea concentration appears to be independent of UTs' expression. Urea supplementation in drinking water resulted in alteration in bacterial gut microbiota that is quite different than that seen in CKD. This indicates that increased intestinal urea concentration might not fully explain the CKD- associated dysbiosis.

Indexed as

DysbiosisGastrointestinal MicrobiomeAdministration, OralAnimalsBacteriaDisease Models, AnimalFecesHost-Pathogen InteractionsHydrolysisIntestine, SmallMaleMembrane Transport ProteinsMice, Inbred C57BLRenal Insufficiency, ChronicRibotypingUreaMembrane Transport ProteinsUreaUreaseurea transporter B, mousechronic kidney diseasegut bacterial microbiotamicrobiologyurea transportersuremic milieu

Identifiers

PMID29693447
PMCPMC6172581
OpenAlexW2801275609

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.