Evidence map›Paper›PMID 29693040›Full record

ArticleCellular and molecular gastroenterology and hepatology2018

Formation of Human Colonic Crypt Array by Application of Chemical Gradients Across a Shaped Epithelial Monolayer.

Yuli Wang, Raehyun Kim, Dulan B Gunasekara, Mark I Reed, Matthew DiSalvo, Daniel L Nguyen, Scott J Bultman, Christopher E Sims, Scott T Magness, Nancy L Allbritton

Open access · goldAbstract read
In one paragraph

Article in Cellular and molecular gastroenterology and hepatology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed, 186 citations in OpenAlex.

  1. Review
  2. Recent advancements and limitations of intestinal organoids for clinical applications.Progress in biomedical engineering (Bristol, England) · 2026
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  6. A scalable long-termbioRxiv : the preprint server for biology · 2025
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  7. Review
  8. Bioprinted Organoids: An Innovative Engine in Biomedicine.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
  9. Review
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  11. Review
  12. Engineered Tissue Models to Decode Host-Microbiota Interactions.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
  13. Article
  14. Emerging technologies and current challenges in intratumoral microbiota research.Frontiers in cellular and infection microbiology · 2025
    Review
  15. Dietary and metabolic effects on intestinal stem cells in health and disease.Nature reviews. Gastroenterology & hepatology · 2025
    Review
  16. Review
  17. Intestinal organ chips for disease modelling and personalized medicine.Nature reviews. Gastroenterology & hepatology · 2024
    Review
  18. Article
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  20. Article

39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Yuli WangDepartment of Chemistry, University of North Carolina, Chapel Hill, North Carolina.
Raehyun KimJoint Department of Biomedical Engineering, University of North Carolina, Chapel Hill, and North Carolina State University, Raleigh, North Carolina.
Dulan B GunasekaraDepartment of Chemistry, University of North Carolina, Chapel Hill, North Carolina.
Mark I ReedDepartment of Chemistry, University of North Carolina, Chapel Hill, North Carolina.
Matthew DiSalvoJoint Department of Biomedical Engineering, University of North Carolina, Chapel Hill, and North Carolina State University, Raleigh, North Carolina.
Daniel L NguyenDepartment of Chemistry, University of North Carolina, Chapel Hill, North Carolina.
Scott J BultmanDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina.
Christopher E SimsDepartment of Chemistry, University of North Carolina, Chapel Hill, North Carolina.
Scott T MagnessJoint Department of Biomedical Engineering, University of North Carolina, Chapel Hill, and North Carolina State University, Raleigh, North Carolina.
Nancy L AllbrittonDepartment of Chemistry, University of North Carolina, Chapel Hill, North Carolina.
University of North Carolina at Chapel Hill · USNorth Carolina State University · US

Funding

DEVELOPMENT OF HUMAN INTESTINAL SIMULACRAR01DK109559 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ALLBRITTON, NANCY L., BULTMAN, SCOTT J · 2015 to 2019
$5.2M
NIDDK NIH HHS R01 DK109559
6 · The paper itself

Abstract

BACKGROUND &

aimsThe successful culture of intestinal organoids has greatly enhanced our understanding of intestinal stem cell physiology and enabled the generation of novel intestinal disease models. Although of tremendous value, intestinal organoid culture systems have not yet fully recapitulated the anatomy or physiology of the in vivo intestinal epithelium. The aim of this work was to re-create an intestinal epithelium with a high density of polarized crypts that respond in a physiologic manner to addition of growth factors, metabolites, or cytokines to the basal or luminal tissue surface as occurs in vivo.

methodsA self-renewing monolayer of human intestinal epithelium was cultured on a collagen scaffold microfabricated with an array of crypt-like invaginations. Placement of chemical factors in either the fluid reservoir below or above the cell-covered scaffolding created a gradient of that chemical across the growing epithelial tissue possessing the in vitro crypt structures. Crypt polarization (size of the stem/proliferative and differentiated cell zones) was assessed in response to gradients of growth factors, cytokines, and bacterial metabolites.

resultsChemical gradients applied to the shaped human epithelium re-created the stem/proliferative and differentiated cell zones of the in vivo intestine. Short-chain fatty acids applied as a gradient from the luminal side confirmed long-standing hypotheses that butyrate diminished stem/progenitor cell proliferation and promoted differentiation into absorptive colonocytes. A gradient of interferon-γ and tumor necrosis factor-α significantly suppressed the stem/progenitor cell proliferation, altering crypt formation.

conclusionsThe in vitro human colon crypt array accurately mimicked the architecture, luminal accessibility, tissue polarity, cell migration, and cellular responses of in vivo intestinal crypts.

Indexed as

ALP, alkaline phosphataseBSA, bovine serum albuminDM-B, differentiation medium plus 5 mmol/L butyrateDM-D, DM plus 10 μmol/L DAPTDM, differentiation mediumEDC, 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide hydrochlorideEdU, 5-ethynyl-20-deoxyuridineELISA, enzyme-linked immunosorbent assayEM, expansion mediumIFN-γ, interferon-γIntestinal Epithelial CellsIntestine-On-A-ChipKRT20, cytokeratin 20Muc2, mucin 2NHS, N-hydroxysuccinimideOlfm4, olfactomedin-4PBS, phosphate-buffered salinePDMS, polydimethylsiloxanePolarized CryptP, passagePTFE, polytetrafluoroethyleneSCFA, short-chain fatty acidSEM, scanning electron microscopeSM, stem mediumStem Cell NicheTNF-α, tumor necrosis factor-αZO-1, zonula occludens-1

Identifiers

PMID29693040
PMCPMC5904049
OpenAlexW2766670989

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.