Evidence map›Paper›PMID 29691636›Full record

ArticleMammalian genome : official journal of the International Mammalian Genome Society2018

Genome-wide association for testis weight in the diversity outbred mouse population.

Joshua T Yuan, Daniel M Gatti, Vivek M Philip, Steven Kasparek, Andrew M Kreuzman, Benjamin Mansky, Kayvon Sharif, Dominik Taterra, Walter M Taylor, Mary Thomas and 4 more

Open access · greenAbstract read
In one paragraph

Article in Mammalian genome : official journal of the International Mammalian Genome Society, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Fifteen years of the Diversity Outbred mouse model: a review.Mammalian genome : official journal of the International Mammalian Genome Society · 2026
    Review
  3. Article
  4. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Joshua T YuanDepartment of Computer Science, Program in Molecular Biology & Biochemistry, Middlebury College, Middlebury, VT, 05753, USA.
Daniel M GattiThe Jackson Laboratory, 610 Main Street, Bar Harbor, ME, 04609, USA.
Vivek M PhilipThe Jackson Laboratory, 610 Main Street, Bar Harbor, ME, 04609, USA.
Steven KasparekDepartment of Psychology, Middlebury College, Middlebury, VT, 05753, USA.
Andrew M KreuzmanProgram in Neuroscience, Middlebury College, Middlebury, VT, 05753, USA.
Benjamin ManskyProgram in Neuroscience, Middlebury College, Middlebury, VT, 05753, USA.
Kayvon SharifProgram in Neuroscience, Middlebury College, Middlebury, VT, 05753, USA.
Dominik TaterraProgram in Neuroscience, Middlebury College, Middlebury, VT, 05753, USA.
Walter M TaylorProgram in Neuroscience, Middlebury College, Middlebury, VT, 05753, USA.
Mary ThomasProgram in Neuroscience, Middlebury College, Middlebury, VT, 05753, USA.
Jeremy O WardDepartment of Biology, Program in Molecular Biology & Biochemistry, Middlebury College, Middlebury, VT, 05753, USA.
Andrew HolmesLaboratory of Behavioral and Genomic Neuroscience, National Institute on Alcoholism and Alcohol Abuse (NIAAA), US National Institutes of Health (NIH), Bethesda, MD, USA.
Elissa J CheslerThe Jackson Laboratory, 610 Main Street, Bar Harbor, ME, 04609, USA.
Clarissa C ParkerDepartment of Psychology, Middlebury College, Middlebury, VT, 05753, USA. cparker@middlebury.edu.ORCID http://orcid.org/0000-0002-0361-7095
Middlebury College · USJackson Laboratory · USNational Institutes of Health · US

Funding

Vermont INBRE Administrative Supplement 2024 AWD 118P20GM103449 · NIGMS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI Julie Dragon · 2012 to 2026
$58.4M
Mouse models of stress disorders and addictionZIAAA000411 · NIAAA · NATIONAL INSTITUTE ON ALCOHOL ABUSE AND ALCOHOLISM · PI HOLMES, ANDREW · 2009 to 2025
$37.7M
Project 5: Circadian RhythmsP50DA039841 · NIDA · JACKSON LABORATORY · PI Lisa M Tarantino · 2016 to 2026
$26.2M
Discovery of Addiction-Related Genes with Advanced Mouse ResourcesR01DA037927 · NIDA · JACKSON LABORATORY · PI CHESLER, ELISSA J · 2015 to 2025
$8.1M
NIDA NIH HHS P50 DA039841NIDA NIH HHS R01 DA037927NIGMS NIH HHS P20 GM103449NIGMS NIH HHS P20-GM-103449
6 · The paper itself

Abstract

Testis weight is a genetically mediated trait associated with reproductive efficiency across numerous species. We sought to evaluate the genetically diverse, highly recombinant Diversity Outbred (DO) mouse population as a tool to identify and map quantitative trait loci (QTLs) associated with testis weight. Testis weights were recorded for 502 male DO mice and the mice were genotyped on the GIGAMuga array at ~ 143,000 SNPs. We performed a genome-wide association analysis and identified one significant and two suggestive QTLs associated with testis weight. Using bioinformatic approaches, we developed a list of candidate genes and identified those with known roles in testicular size and development. Candidates of particular interest include the RNA demethylase gene Alkbh5, the cyclin-dependent kinase inhibitor gene Cdkn2c, the dynein axonemal heavy chain gene Dnah11, the phospholipase D gene Pld6, the trans-acting transcription factor gene Sp4, and the spermatogenesis-associated gene Spata6, each of which has a human ortholog. Our results demonstrate the utility of DO mice in high-resolution genetic mapping of complex traits, enabling us to identify developmentally important genes in adult mice. Understanding how genetic variation in these genes influence testis weight could aid in the understanding of mechanisms of mammalian reproductive function.

Indexed as

Genome-Wide Association StudyOrgan SizeAnimalsAnimals, Outbred StrainsChromosome MappingComputational BiologyGenetic LinkageGenetics, PopulationGenetic VariationGenotypeMaleMicePhenotypeQuantitative Trait LociTestis

Identifiers

PMID29691636
PMCPMC6396879
OpenAlexW2801659070

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.