Evidence map›Paper›PMID 29691634›Full record

ArticleJournal of comparative physiology. B, Biochemical, systemic, and environmental physiology2018

The ctenidium of the giant clam, Tridacna squamosa, expresses an ammonium transporter 1 that displays light-suppressed gene and protein expression and may be involved in ammonia excretion.

Mel V Boo, Kum C Hiong, Enan J K Goh, Celine Y L Choo, Wai P Wong, Shit F Chew, Yuen K Ip

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In one paragraph

Article in Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 17 citations in OpenAlex.

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  2. Expression and Functional Analysis ofAnimals : an open access journal from MDPI · 2023
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  3. Article
  4. Vital Role ofFrontiers in physiology · 2021
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Mel V BooDepartment of Biological Sciences, National University of Singapore, Kent Ridge, Singapore, 117543, Republic of Singapore.
Kum C HiongDepartment of Biological Sciences, National University of Singapore, Kent Ridge, Singapore, 117543, Republic of Singapore.
Enan J K GohDepartment of Biological Sciences, National University of Singapore, Kent Ridge, Singapore, 117543, Republic of Singapore.
Celine Y L ChooDepartment of Biological Sciences, National University of Singapore, Kent Ridge, Singapore, 117543, Republic of Singapore.
Wai P WongDepartment of Biological Sciences, National University of Singapore, Kent Ridge, Singapore, 117543, Republic of Singapore.
Shit F ChewNatural Sciences and Science Education, National Institute of Education, Nanyang Technological University, 1 Nanyang Walk, Singapore, 637616, Republic of Singapore.
Yuen K IpDepartment of Biological Sciences, National University of Singapore, Kent Ridge, Singapore, 117543, Republic of Singapore. dbsipyk@nus.edu.sg.
National University of Singapore · SGNanyang Technological University · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ammonium transporters (AMTs) can participate in ammonia uptake or excretion across the plasma membrane of prokaryotic, plant and invertebrate cells. The giant clam, Tridacna squamosa, harbors nitrogen-deficient symbiotic zooxanthellae, and normally conducts light-enhanced ammonia absorption to benefit the symbionts. Nonetheless, it can excrete ammonia when there is a supply of exogenous nitrogen or exposed to continuous darkness. This study aimed to elucidate the role of AMT1 in the ctenidium of T. squamosa by cloning and characterizing the AMT1/AMT1, determining its subcellular localization, and examining changes in its transcript and protein expression levels in response to light exposure. The cDNA coding sequence of AMT1 from T. squamosa consisted of 1527 bp and encoded 508 amino acids of 54.6 kDa. AMT1-immunofluorescence was detected mainly at the apical epithelium of ctenidial filaments, and it decreased significantly after 12 h of exposure to light. By contrast, the epithelial cells surrounding the tertiary water channels in the ctentidium, which are known to exhibit light-enhanced glutamine synthetase expression and take part in the assimilation of exogenous ammonia in light, did not display any AMT1-immunolabelling. Furthermore, the transcript level and protein abundance of ctenidial AMT1/AMT1 decreased significantly at the 6th and 12th h of light exposure. Taken together, these results indicate that AMT1 might participate in ammonia excretion instead of ammonia absorption and assimilation in T. squamosa. It is probable that the expression levels of AMT1/AMT1 need to be down-regulated during light exposure to achieve light-enhanced ammonia uptake.

Indexed as

LightAmino Acid SequenceAmmoniaAmmonium CompoundsAnimalsBase SequenceBiological TransportBivalviaCation Transport ProteinsGene Expression RegulationAmmoniaAmmonium CompoundsCation Transport ProteinsAmmonia excretionGlutamine synthetaseNitrogenTridacnidUreaZooxanthellae

Identifiers

PMID29691634
OpenAlexW2802927546

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.