Evidence map›Paper›PMID 29691494›Full record

ArticleScientific reports2018

Genetic diversity in the endangered terrestrial orchid Cypripedium japonicum in East Asia: Insights into population history and implications for conservation.

Huai Zhen Tian, Li Xia Han, Jun Li Zhang, Xing Lin Li, Takayuki Kawahara, Tomohisa Yukawa, Jordi López-Pujol, Pankaj Kumar, Myong Gi Chung, Mi Yoon Chung

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

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  11. Cytological Study ofPlants (Basel, Switzerland) · 2021
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  13. Molecular characterization of endangered Iranian terrestrial orchids using ISSR markers and association with floral and tuber-related phenotypic traits.Physiology and molecular biology of plants : an international journal of functional plant biology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Huai Zhen TianSchool of Life Sciences, East China Normal University, Shanghai, 200241, China. thz0102@126.com.
Li Xia HanSchool of Life Sciences, East China Normal University, Shanghai, 200241, China.
Jun Li ZhangSchool of Life Sciences, East China Normal University, Shanghai, 200241, China.
Xing Lin LiSchool of Life Sciences, East China Normal University, Shanghai, 200241, China.
Takayuki KawaharaHokkaido Research Center, Forestry and Forest Products Research Institute, Sapporo, Hokkaido, Japan.
Tomohisa YukawaTsukuba Botanical Garden, National Museum of Nature and Science, Tsukuba, Ibaraki, Japan.
Jordi López-PujolBotanic Institute of de Barcelona (IBB, CSIC-ICUB), Passeig del Migdia s/n, Barcelona, 08038, Spain.
Pankaj KumarKadoorie Farm & Botanic Garden, Lam Kam Rd., Lam Tsuen, Tai Po, New Territories, Hong Kong SAR, China.ORCID 0000-0002-3469-5731
Myong Gi ChungDivision of Life Science and the Research Institute of Natural Science (RINS), Gyeongsang National University, Jinju, 52828, Republic of Korea. mgchung@gnu.ac.kr.
Mi Yoon ChungRINS, Gyeongsang National University, Jinju, 52828, Republic of Korea. miyoon71@gnu.ac.kr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Little is known about levels and patterns of genetic diversity for the entire range of endangered orchids native to China, Korea, and Japan. In this study, we focus on Cypripedium japonicum and suggest three hypotheses: 1) that genetic drift has been a primary evolutionary force; 2) that populations in central and western China harbor higher levels of genetic variation relative to those from eastern China; and 3) that C. japonicum in China maintains the highest genetic variation among the three countries. Using ISSR and SCoT markers, we investigated genetic diversity in 17 populations to test the three hypotheses. As anticipated, we found low levels of genetic diversity at the species level with substantially high degree of genetic divergence, which can be mainly attributed to random genetic drift. Chinese populations harbor the highest within-population genetic variation, which tends to increase from east to west. We also found a close relationship between Korean populations and central/western Chinese populations. Historical rarity coupled with limited gene flow seems to be important factors for shaping genetic diversity and structure of C. japonicum. Our results indicate that the mountain areas in central and western China were likely refugia at the Last Glacial Maximum.

Indexed as

Asia, EasternChinaConservation of Natural ResourcesEndangered SpeciesGene FlowGenetic DriftGenetics, PopulationGenetic VariationJapanOrchidaceaePhylogenyRepublic of Korea

Identifiers

PMID29691494
PMCPMC5915404

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.