Evidence map›Paper›PMID 29691383›Full record

ArticleNature communications2018

The Gastrodia elata genome provides insights into plant adaptation to heterotrophy.

Yuan Yuan, Xiaohua Jin, Juan Liu, Xing Zhao, Junhui Zhou, Xin Wang, Deyi Wang, Changjiangsheng Lai, Wei Xu, Jingwen Huang and 18 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 162 papers.

0numbers the graph read from it
0cells of the map it votes in
162citing papers in PubMed
34.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

162 citing papers in PubMed, 326 citations in OpenAlex.

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  14. Comparative organellar genomics ofFrontiers in plant science · 2026
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  15. The multichromosomal structure evolution ofFrontiers in plant science · 2026
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102 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 6 institutions in 1 country.

Yuan YuanNational Resource Center for Chinese Meteria Medica, Chinese Academy of Chinese Medical Sciences, 100700, Beijing, China. y_yuan0732@163.com.
Xiaohua JinInstitute of Botany, Chinese Academy of Sciences (IBCAS), 100093, Beijing, China.
Juan LiuNational Resource Center for Chinese Meteria Medica, Chinese Academy of Chinese Medical Sciences, 100700, Beijing, China.
Xing ZhaoNovogene Bioinformatics Institute, 100083, Beijing, China.
Junhui ZhouNational Resource Center for Chinese Meteria Medica, Chinese Academy of Chinese Medical Sciences, 100700, Beijing, China.
Xin WangNational Resource Center for Chinese Meteria Medica, Chinese Academy of Chinese Medical Sciences, 100700, Beijing, China.
Deyi WangInstitute of Botany, Chinese Academy of Sciences (IBCAS), 100093, Beijing, China.
Changjiangsheng LaiNational Resource Center for Chinese Meteria Medica, Chinese Academy of Chinese Medical Sciences, 100700, Beijing, China.
Wei XuNovogene Bioinformatics Institute, 100083, Beijing, China.
Jingwen HuangNational Resource Center for Chinese Meteria Medica, Chinese Academy of Chinese Medical Sciences, 100700, Beijing, China.
Liangping ZhaAnhui University of Chinese Medicine, 230012, Hefei, China.
Dahui LiuHubei University of Chinese Medicine, 430065, Wuhan, China.
Xiao MaInstitute of Botany, Chinese Academy of Sciences (IBCAS), 100093, Beijing, China.
Li WangInstitute of Medicinal Botany, Yunnan Academy of Agricultural Sciences, 650223, Kunming, China.
Menyan ZhouNovogene Bioinformatics Institute, 100083, Beijing, China.
Zhi JiangNovogene Bioinformatics Institute, 100083, Beijing, China.
Hubiao MengNational Resource Center for Chinese Meteria Medica, Chinese Academy of Chinese Medical Sciences, 100700, Beijing, China.
Huasheng PengAnhui University of Chinese Medicine, 230012, Hefei, China.
Yuting LiangNational Resource Center for Chinese Meteria Medica, Chinese Academy of Chinese Medical Sciences, 100700, Beijing, China.
Ruiqiang LiNovogene Bioinformatics Institute, 100083, Beijing, China.
Chao JiangNational Resource Center for Chinese Meteria Medica, Chinese Academy of Chinese Medical Sciences, 100700, Beijing, China.
Yuyang ZhaoNational Resource Center for Chinese Meteria Medica, Chinese Academy of Chinese Medical Sciences, 100700, Beijing, China.
Tiegui NanNational Resource Center for Chinese Meteria Medica, Chinese Academy of Chinese Medical Sciences, 100700, Beijing, China.
Yan JinNational Resource Center for Chinese Meteria Medica, Chinese Academy of Chinese Medical Sciences, 100700, Beijing, China.
Zhilai ZhanNational Resource Center for Chinese Meteria Medica, Chinese Academy of Chinese Medical Sciences, 100700, Beijing, China.
Jian YangNational Resource Center for Chinese Meteria Medica, Chinese Academy of Chinese Medical Sciences, 100700, Beijing, China.
Wenkai JiangNovogene Bioinformatics Institute, 100083, Beijing, China. jiangwenkai@novogene.com.ORCID http://orcid.org/0000-0001-8863-3117
Luqi HuangNational Resource Center for Chinese Meteria Medica, Chinese Academy of Chinese Medical Sciences, 100700, Beijing, China. huangluqi01@126.com.
Chinese Academy of Medical Sciences & Peking Union Medical College · CNNovogene Bioinformatics Institute · CNChinese Academy of Sciences · CNAnhui University of Traditional Chinese Medicine · CNHubei University of Chinese Medicine · CNYunnan Academy of Agricultural Sciences · CN

Funding

HSRD VA TPP 10-008
6 · The paper itself

Abstract

We present the 1.06 Gb sequenced genome of Gastrodia elata, an obligate mycoheterotrophic plant, which contains 18,969 protein-coding genes. Many genes conserved in other plant species have been deleted from the G. elata genome, including most of those for photosynthesis. Additional evidence of the influence of genome plasticity in the adaptation of this mycoheterotrophic lifestyle is evident in the large number of gene families that are expanded in G. elata, including glycoside hydrolases and urease that likely facilitate the digestion of hyphae are expanded, as are genes associated with strigolactone signaling, and ATPases that may contribute to the atypical energy metabolism. We also find that the plastid genome of G. elata is markedly smaller than that of green plant species while its mitochondrial genome is one of the largest observed to date. Our report establishes a foundation for studying adaptation to a mycoheterotrophic lifestyle.

Indexed as

Genome, PlantAcclimatizationAdaptation, PhysiologicalGastrodiaHeterotrophic ProcessesPhylogenyPlant ProteinsPlant Proteins

Identifiers

PMID29691383
PMCPMC5915607
OpenAlexW2800359811

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.