Evidence map›Paper›PMID 29691153›Full record

ArticleBioorganic & medicinal chemistry2018

Targeting species specific amino acid residues: Design, synthesis and biological evaluation of 6-substituted pyrrolo[2,3-d]pyrimidines as dihydrofolate reductase inhibitors and potential anti-opportunistic infection agents.

Khushbu Shah, Xin Lin, Sherry F Queener, Vivian Cody, Jim Pace, Aleem Gangjee

Open access · greenAbstract read
In one paragraph

Article in Bioorganic & medicinal chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Khushbu ShahDivision of Medicinal Chemistry, Graduate School of Pharmaceutical Sciences, Duquesne University, Pittsburgh, PA 15282, United States.
Xin LinDivision of Medicinal Chemistry, Graduate School of Pharmaceutical Sciences, Duquesne University, Pittsburgh, PA 15282, United States.
Sherry F QueenerDepartment of Pharmacology and Toxicology, Indiana University School of Medicine, Indianapolis, IN 46202, United States.
Vivian CodyHauptman-Woodward Medical Research Institute, 700 Ellicott Street, Buffalo, NY 14203, United States.
Jim PaceHauptman-Woodward Medical Research Institute, 700 Ellicott Street, Buffalo, NY 14203, United States.
Aleem GangjeeDivision of Medicinal Chemistry, Graduate School of Pharmaceutical Sciences, Duquesne University, Pittsburgh, PA 15282, United States. Electronic address: gangjee@duq.edu.
Duquesne University · USHauptman-Woodward Medical Research Institute · USIndiana University School of Medicine

Funding

Pneumocystis jirovecii Targeted Antiopportunistic AgentsR01AI098458 · NIAID · DUQUESNE UNIVERSITY · PI GANGJEE, ALEEM · 2012 to 2016
$1.9M
NIAID NIH HHS R01 AI098458
6 · The paper itself

Abstract

To combine the potency of trimetrexate (TMQ) or piritrexim (PTX) with the species selectivity of trimethoprim (TMP), target based design was carried out with the X-ray crystal structure of human dihydrofolate reductase (hDHFR) and the homology model of Pneumocystis jirovecii DHFR (pjDHFR). Using variation of amino acids such as Met33/Phe31 (in pjDHFR/hDHFR) that affect the binding of inhibitors due to their distinct positive or negative steric effect at the active binding site of the inhibitor, we designed a series of substituted-pyrrolo[2,3-d]pyrimidines. The best analogs displayed better potency (IC

Indexed as

Amino AcidsAnti-Bacterial AgentsCatalytic DomainCrystallography, X-RayDrug DesignEnzyme AssaysFolic Acid AntagonistsHumansHydrogen BondingHydrophobic and Hydrophilic InteractionsMolecular Docking SimulationMolecular StructurePneumocystis cariniiProtein BindingPyrimidinesPyrrolesAmino AcidsAnti-Bacterial AgentsFolic Acid AntagonistsPyrimidinesPyrrolesTetrahydrofolate DehydrogenaseDHFR inhibitorshDHFROpportunistic infectionspjDHFRPneumocystis pneumoniaPyrrolo[2,3-d]pyrimidines

Identifiers

PMID29691153
PMCPMC5967623
OpenAlexW2799341268

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.