Evidence map›Paper›PMID 29689046›Full record

ArticlePLoS biology2018

Evolutionary novelty in gravity sensing through horizontal gene transfer and high-order protein assembly.

Tu Anh Nguyen, Jamie Greig, Asif Khan, Cara Goh, Gregory Jedd

Abstract read
In one paragraph

Article in PLoS biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Review
  3. Parallel evolution of gravity sensing.Frontiers in cell and developmental biology · 2024
    Article
  4. Review
  5. Article
  6. Morphology ofLife (Basel, Switzerland) · 2023
    Article
  7. Article
  8. Article
  9. Fungal evolution: cellular, genomic and metabolic complexity.Biological reviews of the Cambridge Philosophical Society · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Tu Anh NguyenTemasek Life Sciences Laboratory & Department of Biological Sciences, The National University of Singapore, Singapore.
Jamie GreigTemasek Life Sciences Laboratory & Department of Biological Sciences, The National University of Singapore, Singapore.
Asif KhanTemasek Life Sciences Laboratory & Department of Biological Sciences, The National University of Singapore, Singapore.
Cara GohTemasek Life Sciences Laboratory & Department of Biological Sciences, The National University of Singapore, Singapore.
Gregory JeddTemasek Life Sciences Laboratory & Department of Biological Sciences, The National University of Singapore, Singapore.ORCID 0000-0002-5428-3873

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Horizontal gene transfer (HGT) can promote evolutionary adaptation by transforming a species' relationship to the environment. In most well-understood cases of HGT, acquired and donor functions appear to remain closely related. Thus, the degree to which HGT can lead to evolutionary novelties remains unclear. Mucorales fungi sense gravity through the sedimentation of vacuolar protein crystals. Here, we identify the octahedral crystal matrix protein (OCTIN). Phylogenetic analysis strongly supports acquisition of octin by HGT from bacteria. A bacterial OCTIN forms high-order periplasmic oligomers, and inter-molecular disulphide bonds are formed by both fungal and bacterial OCTINs, suggesting that they share elements of a conserved assembly mechanism. However, estimated sedimentation velocities preclude a gravity-sensing function for the bacterial structures. Together, our data suggest that HGT from bacteria into the Mucorales allowed a dramatic increase in assembly scale and emergence of the gravity-sensing function. We conclude that HGT can lead to evolutionary novelties that emerge depending on the physiological and cellular context of protein assembly.

Indexed as

Biological EvolutionGene Transfer, HorizontalGravitationBacterial ProteinsCloning, MolecularEscherichia coliGene ExpressionGenes, ReporterGenetic VectorsGreen Fluorescent ProteinsHeLa CellsHumansLuminescent ProteinsMucoralesPeriplasmPhylogenyBacterial ProteinsGreen Fluorescent ProteinsLuminescent ProteinsRecombinant ProteinsRed Fluorescent Protein

Identifiers

PMID29689046
PMCPMC5915273

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.