Evidence map›Paper›PMID 29688792›Full record

ArticleMolecular biology of the cell2018

Superresolution imaging of Drosophila tissues using expansion microscopy.

Nan Jiang, Hyeon-Jin Kim, Tyler J Chozinski, Jorge E Azpurua, Benjamin A Eaton, Joshua C Vaughan, Jay Z Parrish

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
8.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 64 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Nan JiangDepartment of Biology, University of Washington, Seattle, WA 98195.
Hyeon-Jin KimDepartment of Chemistry, University of Washington, Seattle, WA 98195.
Tyler J ChozinskiDepartment of Chemistry, University of Washington, Seattle, WA 98195.
Jorge E AzpuruaDepartment of Physiology, University of Texas Health Sciences Center, San Antonio, TX 78229.
Benjamin A EatonDepartment of Physiology, University of Texas Health Sciences Center, San Antonio, TX 78229.
Joshua C VaughanDepartment of Chemistry, University of Washington, Seattle, WA 98195.
Jay Z ParrishDepartment of Biology, University of Washington, Seattle, WA 98195.
University of Washington · USThe University of Texas Health Science Center at San Antonio · US

Funding

Resource Component: Acquisition, maintenance and distribution of Drosophila stocksP40OD018537 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Annette L. Parks · 2014 to 2026
$13.5M
Structural and functional coupling of epidermis to somatosensory neurons in DrosophilaR01NS076614 · NINDS · UNIVERSITY OF WASHINGTON · PI BAUTISTA, DIANA MICHELE, PARRISH, JAY Z · 2011 to 2023
$4.2M
Spatially Resolved Transcriptomics Enabled by Ultrabright Pdot Probes for Interrogation of Complex TissuesR01MH115767 · NIMH · UNIVERSITY OF WASHINGTON · PI CHIU, DANIEL T, VAUGHAN, JOSHUA · 2017 to 2021
$3.7M
NIH HHS P40 OD018537NIMH NIH HHS R01 MH115767NINDS NIH HHS R01 NS076614Wellcome Trust
6 · The paper itself

Abstract

The limited resolving power of conventional diffraction-limited microscopy hinders analysis of small, densely packed structural elements in cells. Expansion microscopy (ExM) provides an elegant solution to this problem, allowing for increased resolution with standard microscopes via physical expansion of the specimen in a swellable polymer hydrogel. Here, we apply, validate, and optimize ExM protocols that enable the study of Drosophila embryos, larval brains, and larval and adult body walls. We achieve a lateral resolution of ∼70 nm in Drosophila tissues using a standard confocal microscope, and we use ExM to analyze fine intracellular structures and intercellular interactions. First, we find that ExM reveals features of presynaptic active zone (AZ) structure that are observable with other superresolution imaging techniques but not with standard confocal microscopy. We further show that synapses known to exhibit age-dependent changes in activity also exhibit age-dependent changes in AZ structure. Finally, we use the significantly improved axial resolution of ExM to show that dendrites of somatosensory neurons are inserted into epithelial cells at a higher frequency than previously reported in confocal microscopy studies. Altogether, our study provides a foundation for the application of ExM to Drosophila tissues and underscores the importance of tissue-specific optimization of ExM procedures.

Indexed as

Imaging, Three-DimensionalAgingAnimalsCell CommunicationDrosophila melanogasterMicroscopy, ConfocalPresynaptic TerminalsSubcellular Fractions

Identifiers

PMID29688792
PMCPMC6014096
OpenAlexW2802599567

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.