Evidence map›Paper›PMID 29687242›Full record

ArticleHistochemistry and cell biology2018

Confocal micrographs: automated segmentation and quantitative shape analysis of neuronal cells treated with ostreolysin A/pleurotolysin B pore-forming complex.

Lazar Kopanja, Zorana Kovacevic, Marin Tadic, Monika Cecilija Žužek, Milka Vrecl, Robert Frangež

Abstract read
PubMed Publisher
In one paragraph

Article in Histochemistry and cell biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.8field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 11 citations in OpenAlex.

  1. In focus in HCB.Histochemistry and cell biology · 2020
    Article
  2. Article
  3. In focus in HCB.Histochemistry and cell biology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Lazar KopanjaFaculty of Mathematics and Computer Science, Alfa BK University, Belgrade, Serbia.
Zorana KovacevicDepartment of Veterinary Medicine, Faculty of Agriculture, University of Novi Sad, Novi Sad, Serbia.
Marin TadicCondensed Matter Physics Laboratory, Vinca Institute, University of Belgrade, Belgrade, Serbia.
Monika Cecilija ŽužekInstitute of Preclinical Sciences, Veterinary Faculty, University of Ljubljana, Ljubljana, Slovenia.
Milka VreclInstitute of Preclinical Sciences, Veterinary Faculty, University of Ljubljana, Ljubljana, Slovenia.
Robert FrangežInstitute of Preclinical Sciences, Veterinary Faculty, University of Ljubljana, Ljubljana, Slovenia. robert.frangez@vf.uni-lj.si.
University of Ljubljana · SIUniversity of Belgrade · RSUniversity of Novi Sad · RS

Funding

Javna Agencija za Raziskovalno Dejavnost RS (SI) P4-0053
6 · The paper itself

Abstract

Detailed shape analysis of cells is important to better understand the physiological mechanisms of toxins and determine their effects on cell morphology. This study aimed to develop a procedure for accurate morphological analysis of cell shape and use it as a tool to estimate toxin activity. With the aim of optimizing the method of cell morphology analysis, we determined the influence of ostreolysin A and pleurotolysin B complex (OlyA/PlyB) on the morphology of murine neuronal NG108-15 cells. A computational method was introduced and successfully applied to quantify morphological attributes of the NG108-15 cell line before and after 30 and 60 min exposure to OlyA/PlyB using confocal microscopy. The modified circularity measure [Formula: see text] for shape analysis was applied, which defines the degree to which the shape of the neuron differs from a perfect circle. It enables better detection of small changes in the shape of cells, making the outcome easily detectable numerically. Additionally, we analyzed the influence of OlyA/PlyB on the cell area, allowing us to detect the cells with blebs. This is important because the formation of plasma membrane protrusions such as blebs often reflects cell injury that leads to necrotic cell death. In summary, we offer a novel analytical method of neuronal cell shape analysis and its correlation with the toxic effects of the pore-forming OlyA/PlyB toxin in situ.

Indexed as

AutomationAnimalsFungal ProteinsHemolysin ProteinsMiceMicroscopy, ConfocalNeuronsRatsTumor Cells, CulturedFungal ProteinsHemolysin Proteinsostreolysinpleurotolysin B, oyster mushroomCell morphologyCell shapeConfocal microscopyImage analysesOstreolysin A/pleurotolysin B

Identifiers

PMID29687242
OpenAlexW2800137965

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.