Evidence map›Paper›PMID 29687224›Full record

ArticleMicrobial ecology2018

Bacterial Succession Decreases Network Complexity During Plant Material Decomposition in Mangroves.

Marta A Moitinho, Laura Bononi, Danilo T Souza, Itamar S Melo, Rodrigo G Taketani

Abstract read
PubMed Publisher
In one paragraph

Article in Microbial ecology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Application of extracellular polymers on soil communities exposed to oil and nickel contamination.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2021
    Article
  6. Article
  7. Review
  8. Intraspecific variation on epiphytic bacterial community from Laguncularia racemosa phylloplane.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2019
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Marta A MoitinhoLaboratory of Environmental Microbiology, Brazilian Agricultural Research Corporation, EMBRAPA Environment, SP 340 Highway-Km 127.5, Jaguariuna, SP, 13820-000, Brazil.
Laura BononiLaboratory of Environmental Microbiology, Brazilian Agricultural Research Corporation, EMBRAPA Environment, SP 340 Highway-Km 127.5, Jaguariuna, SP, 13820-000, Brazil.
Danilo T SouzaLaboratory of Environmental Microbiology, Brazilian Agricultural Research Corporation, EMBRAPA Environment, SP 340 Highway-Km 127.5, Jaguariuna, SP, 13820-000, Brazil.
Itamar S MeloLaboratory of Environmental Microbiology, Brazilian Agricultural Research Corporation, EMBRAPA Environment, SP 340 Highway-Km 127.5, Jaguariuna, SP, 13820-000, Brazil.
Rodrigo G TaketaniLaboratory of Environmental Microbiology, Brazilian Agricultural Research Corporation, EMBRAPA Environment, SP 340 Highway-Km 127.5, Jaguariuna, SP, 13820-000, Brazil. rgtaketani@yahoo.com.br.ORCID http://orcid.org/0000-0002-5999-8704

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico 142309/2016-8FAPESP São Paulo Research Foundation 2013/23470-2FAPESP São Paulo Research Foundation 2013/25505-8Fundação de Amparo à Pesquisa do Estado de São Paulo 2013/03158-4
6 · The paper itself

Abstract

In this study, 16S rRNA gene amplicon sequencing was used to assess bacterial diversity and dynamics throughout different stages of leaves decomposition of three plant species (Rhizophora mangle, Laguncularia racemosa, and Avicennia schaueriana) in three distinct mangroves of São Paulo state, Brazil. The experiments were conducted in microcosms. Phylogenetic diversity (Faiths' PD) index showed differences between samples and suggested that some treatments like R. mangle increased their bacterial diversity through time. Principal coordinate analysis revealed that community's profile varied based on mangroves, followed by plant species and time. A clear succession patterns was observed in this study, i.e., some microorganisms with low abundance in the initial phases gradually became dominant (e.g., Alphaproteobacteria), whereas microbes that were initially predominant became low (e.g., Gammaproteobacteria). Co-occurrence analyses were performed for all times of plant degradation aiming to better understand the relationships between bacterial populations. The c-score index was done to test the randomness of the community assemblage during the stages of decomposition. For all degradation time points, the values of the observed c-score were higher than the values of the simulated c-score. This result indicated that during plant decomposition, the bacterial communities presented less co-occurrence than expected by chance and that these communities were not randomly assembled but instead they are driven by species interactions. Network analyses results showed that in the conditions presented in this experiment, the initial stages of leaf decomposition formed more connected and complex networks than the later stages. These results suggest that resource competition was a determinant in these specific mangroves during plant degradation, mainly in the initial periods.

Indexed as

MicrobiotaAvicenniaBacteriaBrazilCombretaceaePlant LeavesRhizophoraceaeRNA, BacterialRNA, Ribosomal, 16SSequence Analysis, RNARNA, BacterialRNA, Ribosomal, 16SBacterial dynamicCo-occurrence analysisMangrove plant degradationMicrocosms

Identifiers

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.