Evidence map›Paper›PMID 29682317›Full record

ArticleFuture science OA2018

Validation of quantitative polymerase chain reaction with Southern blot method for telomere length analysis.

Mohamad Tarik, Lakshmy Ramakrishnan, Harshpal S Sachdev, Nikhil Tandon, Ambuj Roy, Santosh K Bhargava, Ravindra M Pandey

Open access · goldAbstract read
In one paragraph

Article in Future science OA, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

  1. Do the telomere ends justify the physical means?Journal of the American Geriatrics Society · 2021
    Article
  2. Article
  3. Article
  4. Telomere Attrition in Neurodegenerative Disorders.Frontiers in cellular neuroscience · 2020
    Article
  5. Article
  6. Hazardous air pollutants and telomere length in the Sister Study.Environmental epidemiology (Philadelphia, Pa.) · 2019
    Article
  7. Article
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Mohamad TarikDepartment of Cardiac Biochemistry, All India Institute of Medical Science, New Delhi, India.
Lakshmy RamakrishnanDepartment of Cardiac Biochemistry, All India Institute of Medical Science, New Delhi, India.
Harshpal S SachdevDepartment of Pediatrics & Epidemiology, Sitaram Bhartia Institute of Science & Research, New Delhi, India.
Nikhil TandonDepartment of Endocrinology & Metabolism, All India Institute of Medical Science, New Delhi, India.
Ambuj RoyDepartment of Cardiology, All India Institute of Medical Science, New Delhi, India.
Santosh K BhargavaDepartment of Pediatrics, Sunderlal Jain Hospital, New Delhi, India.
Ravindra M PandeyDepartment of Biostatistics, All India Institute of Medical Science, New Delhi, India.
All India Institute of Medical Sciences · INSitaram Bhartia Institute of Science and Research · INSunder Lal Jain Hospital · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aimTelomere length (TL) measurement by quantitative polymerase chain reaction (PCR) has been widely accepted, but limited information regarding its validation with a gold-standard technique is available. MATERIALS &

methodsWe measured TL by Southern blot and monochrome multiplex quantitative PCR (MMqPCR) and validated the results of TL in leukocytes of 94 participants with mean age 43.2 years, BMI 19-41 (mean 27.8 ± 4.3) kg/m

resultsA significant positive correlation was observed between TL measured by MMqPCR and Southern blot assay (correlation coefficient r = +0.896, p < 0.0001). The inter- and intra-assay CVs of the MMqPCR assay were 5.3 and 4.07%, respectively.

conclusionWe observed that experimental discrepancies have an impact on TL analysis and there is a need to improve the optimum conditions.

Indexed as

correlationMMqPCRqPCRreliabilityreproducibilitySouthern blottelomere biology

Identifiers

PMID29682317
PMCPMC5905642
OpenAlexW2783009997

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.