Evidence map›Paper›PMID 29681542›Full record

ArticleStem cell reports2018

DNA Methylation and Regulatory Elements during Chicken Germline Stem Cell Differentiation.

Yanghua He, Qisheng Zuo, John Edwards, Keji Zhao, Jinzhi Lei, Wentao Cai, Qing Nie, Bichun Li, Jiuzhou Song

Open access · goldAbstract read
In one paragraph

Article in Stem cell reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Article
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  5. Article
  6. DNA methylation in poultry: a review.Journal of animal science and biotechnology · 2023
    Review
  7. Article
  8. Article
  9. Promoter Methylation Changes inInternational journal of molecular sciences · 2022
    Article
  10. Article
  11. Article
  12. Review
  13. The regulation mechanisms and the Lamarckian inheritance property of DNA methylation in animals.Mammalian genome : official journal of the International Mammalian Genome Society · 2021
    Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 7 institutions in 2 countries.

Yanghua HeDepartment of Animal & Avian Sciences, University of Maryland, College Park, MD 20742, USA.
Qisheng ZuoCollege of Animal Science and Technology, Yangzhou University, Jiangsu Province Key Laboratory of Animal Breeding and Molecular Design, Yangzhou 225009, People's Republic of China.
John EdwardsCenter for Pharmacogenomics, Department of Medicine, Washington University School of Medicine, 660 S. Euclid Avenue, Campus Box 8220, St. Louis, MO 63110, USA.
Keji ZhaoSystems Biology Center, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, MD 20892, USA.
Jinzhi LeiZhou Peiyuan Center for Applied Mathematics, Tsinghua University, Beijing, 100084, People's Republic of China.
Wentao CaiDepartment of Animal & Avian Sciences, University of Maryland, College Park, MD 20742, USA; Department of Animal Genetics and Breeding, National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China.
Qing NieDepartment of Mathematics, University of California, Irvine, CA 92697-3875, USA.
Bichun LiCollege of Animal Science and Technology, Yangzhou University, Jiangsu Province Key Laboratory of Animal Breeding and Molecular Design, Yangzhou 225009, People's Republic of China. Electronic address: yubcli@yzu.edu.cn.
Jiuzhou SongDepartment of Animal & Avian Sciences, University of Maryland, College Park, MD 20742, USA. Electronic address: songj88@umd.edu.
University of Maryland, College Park · USYangzhou University · CNChina Agricultural University · CNNational Institutes of Health · USTsinghua University · CNUniversity of California, Irvine · USWashington University in St. Louis · US

Funding

Genome-wide mapping of histone modificationsZIAHL005801 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI ZHAO, KEJI · 2009 to 2025
$24.0M
Epigenetic Regulation of Hematopoietic Stem CellsZIAHL006031 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI ZHAO, KEJI · 2009 to 2025
$16.6M
Epigenetic Regulation of T cell differentiationZIAHL006030 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI ZHAO, KEJI · 2009 to 2025
$15.3M
MODELING DNA METHYLATION'S ROLE IN GENE REGULATIONR01GM108811 · NIGMS · WASHINGTON UNIVERSITY · PI EDWARDS, JOHN R. · 2014 to 2018
$1.7M
NIGMS NIH HHS R01 GM108811
6 · The paper itself

Abstract

The production of germ cells in vitro would open important new avenues for stem biology and human medicine, but the mechanisms of germ cell differentiation are not well understood. The chicken, as a great model for embryology and development, was used in this study to help us explore its regulatory mechanisms. In this study, we reported a comprehensive genome-wide DNA methylation landscape in chicken germ cells, and transcriptomic dynamics was also presented. By uncovering DNA methylation patterns on individual genes, some genes accurately modulated by DNA methylation were found to be associated with cancers and virus infection, e.g., AKT1 and CTNNB1. Chicken-unique markers were also discovered for identifying male germ cells. Importantly, integrated epigenetic mechanisms were explored during male germ cell differentiation, which provides deep insight into the epigenetic processes associated with male germ cell differentiation and possibly improves treatment options to male infertility in animals and humans.

Indexed as

DNA MethylationRegulatory Sequences, Nucleic AcidAnimalsBinding SitesBiomarkersBone Morphogenetic ProteinsCell DifferentiationChickensEpigenesis, GeneticEpigenomicsGene Expression Regulation, DevelopmentalGerm CellsModels, BiologicalNucleotide MotifsProtein BindingRNA, Long NoncodingBiomarkersBone Morphogenetic ProteinsRNA, Long NoncodingTransforming Growth Factor betachickenDNA methylationepigeneticsESCsgene expressiongermline stem cell differentiationnon-coding RNAsPGCsSSCstranscription factor motifs

Identifiers

PMID29681542
PMCPMC5989647
OpenAlexW2799745046

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.