Evidence map›Paper›PMID 29681534›Full record

ArticleNeuron2018

Different Neuronal Activity Patterns Induce Different Gene Expression Programs.

Kelsey M Tyssowski, Nicholas R DeStefino, Jin-Hyung Cho, Carissa J Dunn, Robert G Poston, Crista E Carty, Richard D Jones, Sarah M Chang, Palmyra Romeo, Mary K Wurzelmann and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Neuron, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 231 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
231citing papers in PubMed, 2 pooled it
13.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

231 citing papers in PubMed, 2 syntheses or guidelines pooled it, 414 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
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  14. The miR-1843a-3p/Cells · 2026
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  17. Novel mechanisms of chemosensory adaptation to the cave environment.bioRxiv : the preprint server for biology · 2026
    Article
  18. Article
  19. Article
  20. Review

171 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Kelsey M TyssowskiDepartment of Genetics, Harvard Medical School, Boston, MA 02115, USA.
Nicholas R DeStefinoDepartment of Genetics, Harvard Medical School, Boston, MA 02115, USA.
Jin-Hyung ChoDepartment of Genetics, Harvard Medical School, Boston, MA 02115, USA.
Carissa J DunnMolecular Cell Biology Unit, University of California Merced, Merced, CA 95343, USA.
Robert G PostonMolecular Cell Biology Unit, University of California Merced, Merced, CA 95343, USA.
Crista E CartyDivision of Endocrinology, Diabetes and Metabolism, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02115, USA.
Richard D JonesDepartment of Genetics, Harvard Medical School, Boston, MA 02115, USA.
Sarah M ChangDepartment of Genetics, Harvard Medical School, Boston, MA 02115, USA.
Palmyra RomeoNeurobiology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, NC 27709, USA.
Mary K WurzelmannNeurobiology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, NC 27709, USA.
James M WardIntegrative Bioinformatics, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, NC 27709, USA.
Mark L AndermannDivision of Endocrinology, Diabetes and Metabolism, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02115, USA.
Ramendra N SahaMolecular Cell Biology Unit, University of California Merced, Merced, CA 95343, USA; Neurobiology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, NC 27709, USA. Electronic address: rsaha3@ucmerced.edu.
Serena M DudekNeurobiology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, NC 27709, USA. Electronic address: dudek@niehs.nih.gov.
Jesse M GrayDepartment of Genetics, Harvard Medical School, Boston, MA 02115, USA. Electronic address: gray@genetics.med.harvard.edu.
Harvard University · USNational Institutes of Health · USBeth Israel Deaconess Medical Center · USUniversity of California, Merced · US

Funding

Medical Scientist Training ProgramT32GM007753 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALENSKY, LOREN DAVID · 1985 to 2021
$50.0M
Mechanisms Of Synaptic Plasticity In The Adult And Developing Nervous SystemZIAES100221 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI DUDEK, SERENA M · 2009 to 2025
$47.4M
Gene Expression and MicroarraysZICES102445 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI GERRISH, KEVIN · 2009 to 2025
$31.6M
Mouse Neurodevelopmental Behavior CoreU54HD090255 · NICHD · BOSTON CHILDREN'S HOSPITAL · PI SAHIN, MUSTAFA · 2016 to 2020
$5.2M
Synaptic Plasticity In The Adult And Developing NSZ01ES100221 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI DUDEK, SERENA M · 2002 to 2008
$3.5M
Genomic mechanisms of firing rate homeostasisR01MH116223 · NIMH · HARVARD MEDICAL SCHOOL · PI DYMECKI, SUSAN M. · 2018 to 2022
$3.0M
The algorithms used by the genome to interpret neural activityR01MH101528 · NIMH · HARVARD MEDICAL SCHOOL · PI GRAY, JESSE MICHAEL · 2013 to 2017
$2.7M
Multiphoton Imaging of Thoughts of Food During Natural and Induced Hunger StatesDP2DK105570 · NIDDK · BETH ISRAEL DEACONESS MEDICAL CENTER · PI ANDERMANN, MARK L · 2014 to 2014
$2.5M
Neural Pathway Linking Nutritional State To Food-Cue Responses In Insular CortexR01DK109930 · NIDDK · BETH ISRAEL DEACONESS MEDICAL CENTER · PI ANDERMANN, MARK L · 2016 to 2020
$2.2M
Role of H2A.z isoforms in neuronal transcription and synaptic plasticity.R00MH096941 · NIMH · UNIVERSITY OF CALIFORNIA, MERCED · PI SAHA, RAMENDRA N · 2014 to 2016
$747k
Intramural NIH HHS Z01 ES100221NICHD NIH HHS U54 HD090255NIDDK NIH HHS DP2 DK105570NIDDK NIH HHS R01 DK109930NIGMS NIH HHS T32 GM007753NIMH NIH HHS R00 MH096941NIMH NIH HHS R01 MH101528NIMH NIH HHS R01 MH116223
6 · The paper itself

Abstract

A vast number of different neuronal activity patterns could each induce a different set of activity-regulated genes. Mapping this coupling between activity pattern and gene induction would allow inference of a neuron's activity-pattern history from its gene expression and improve our understanding of activity-pattern-dependent synaptic plasticity. In genome-scale experiments comparing brief and sustained activity patterns, we reveal that activity-duration history can be inferred from gene expression profiles. Brief activity selectively induces a small subset of the activity-regulated gene program that corresponds to the first of three temporal waves of genes induced by sustained activity. Induction of these first-wave genes is mechanistically distinct from that of the later waves because it requires MAPK/ERK signaling but does not require de novo translation. Thus, the same mechanisms that establish the multi-wave temporal structure of gene induction also enable different gene sets to be induced by different activity durations.

Indexed as

AnimalsCells, CulturedCerebral CortexFemaleGene Expression RegulationMaleMAP Kinase Signaling SystemMiceMice, Inbred C57BLMice, Inbred ICRNeuronsPhotic StimulationRatsRats, Sprague-Dawleyactivity-regulated enhancersactivity-regulated transcriptioncoupling mapeRNAimmediate early genesMAPKmitogen-activated protein kinaseneuronal activity durationneuronal activity patternsprimary response genesRNA-seq

Identifiers

PMID29681534
PMCPMC5934296
OpenAlexW2950828985

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.