ArticleMolecular cell2018
CapZyme-Seq Comprehensively Defines Promoter-Sequence Determinants for RNA 5' Capping with NAD<sup/>.
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Article in Molecular cell, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.
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52citing papers in PubMed
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Who cites it
52 citing papers in PubMed.
- Discovery of 5' NAD capped viral RNAs reveals evolutionary divergent 5' metabolite capping across hepaciviruses.Nature communications · 2026Article
- Molecular basis for noncanonical transcription initiation from NpNature chemical biology · 2026Article
- Omnivore RNA pyrophosphatase: a versatile enzyme that efficiently removes diverse protecting groups from the 5' end of RNA.Nucleic acids research · 2026Article
- High-resolution mapping reveals features of bacterial NAD-capped RNAs and stress-responsive transcription initiation.Nature communications · 2026Article
- YqeK governs the acquisition and removal of nucleoside tetraphosphate caps in Firmicutes.Nucleic acids research · 2026Article
- Quantification and transcriptome profiling reveal abundant, dynamic and translatable dephospho-CoA-capped RNAs.Nature biotechnology · 2026Article
- NAD+ capping of sibD transcripts in E. coli is mediated by its minimal promoter and enhanced by ppGpp.Nucleic acids research · 2026Article
- 5'-terminal glycosylation of protein-coding transcripts: An epitranscriptomic modification that prolongs mRNA lifetimes.Proceedings of the National Academy of Sciences of the United States of America · 2025Article
- CompasSeq: epitranscriptome-wide percentage assessment of metabolite-capped RNA at the transcript resolution.Nature communications · 2025Article
- The Mysterious World of Non-Canonical Caps - What We Know and Why We Need New Sequencing Techniques.Chembiochem : a European journal of chemical biology · 2025Review
- Stochastic nature and physiological implications of 5'-NAD RNA cap in bacteria.Nucleic acids research · 2024Article
- Co-transcriptional gene regulation in eukaryotes and prokaryotes.Nature reviews. Molecular cell biology · 2024Review
- Identification and in vitro characterization of UDP-GlcNAc-RNA cap-modifying and decapping enzymes.Nucleic acids research · 2024Article
- Toll/interleukin-1 receptor (TIR) domain-containing proteins have NAD-RNA decapping activity.Nature communications · 2024Article
- If the 5' cap fits (wear it) - Non-canonical RNA capping.RNA biology · 2024Review
- Post-transcriptional capping generates coenzyme A-linked RNA.RNA biology · 2024Article
- Epitranscriptome analysis of NAD-capped RNA by spike-in-based normalization and prediction of chronological age.iScience · 2023Article
- Future Perspectives for the Identification and Sequencing of Nicotinamide Adenine Dinucleotide-Capped RNAs.Accounts of chemical research · 2023Article
- DpCoA tagSeq: Barcoding dpCoA-Capped RNA for Direct Nanopore Sequencing via Maleimide-Thiol Reaction.Analytical chemistry · 2023Article
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Authors and funding
11 authors.
Irina O VvedenskayaDepartment of Genetics and Waksman Institute, Rutgers University, Piscataway, NJ 08854, USA.
Jeremy G BirdDepartment of Genetics and Waksman Institute, Rutgers University, Piscataway, NJ 08854, USA; Department of Chemistry and Waksman Institute, Rutgers University, Piscataway, NJ 08854, USA.
Yuanchao ZhangDepartment of Genetics and Waksman Institute, Rutgers University, Piscataway, NJ 08854, USA; Department of Biomedical and Health Informatics, Children's Hospital, Philadelphia, PA 19041, USA.
Yu ZhangKey Laboratory of Synthetic Biology, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China.
Xinfu JiaoDepartment of Cell Biology and Neuroscience, Rutgers University, Piscataway, NJ 08854, USA.
Ivan BarvíkDivision of Biomolecular Physics, Institute of Physics, Faculty of Mathematics and Physics, Charles University, Ke Karlovu 5, 12116 Prague 2, Czech Republic.
Libor KrásnýInstitute of Microbiology, Czech Academy of Sciences, v.v.i., Vídeňská 1083, 14220 Prague 4, Czech Republic.
Megerditch KiledjianDepartment of Cell Biology and Neuroscience, Rutgers University, Piscataway, NJ 08854, USA.
Deanne M TaylorDepartment of Genetics and Waksman Institute, Rutgers University, Piscataway, NJ 08854, USA; Department of Biomedical and Health Informatics, Children's Hospital, Philadelphia, PA 19041, USA; Department of Pediatrics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; Department of Obstetrics, Gynecology and Reproductive Sciences, Rutgers Robert Wood Johnson Medical School, New Brunswick, NJ 08901, USA.
Richard H EbrightDepartment of Chemistry and Waksman Institute, Rutgers University, Piscataway, NJ 08854, USA. Electronic address: ebright@waksman.rutgers.edu.
Bryce E NickelsDepartment of Genetics and Waksman Institute, Rutgers University, Piscataway, NJ 08854, USA. Electronic address: bnickels@waksman.rutgers.edu.
Funding
Transcription: Mechanism and RegulationR35GM118059 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI NICKELS, BRYCE EDWARD · 2016 to 2025
$7.1MTRANSCRIPTION ACTIVATION BY CAPR01GM041376 · NIGMS · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI RICHARD H. EBRIGHT · 1989 to 2026
$6.5MRegulation of Mammalian mRNA DecayR01GM067005 · NIGMS · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI KILEDJIAN, MEGERDITCH · 2004 to 2022
$5.5MBACTERIAL TRANSCRIPTION COMPLEXESR37GM041376 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI EBRIGHT, RICHARD H. · 2013 to 2022
$5.0MNIGMS NIH HHS R01 GM041376NIGMS NIH HHS R01 GM067005NIGMS NIH HHS R35 GM118059NIGMS NIH HHS R37 GM041376
Abstract
Nucleoside-containing metabolites such as NAD
Indexed as
DNA-Directed RNA PolymerasesEndoribonucleasesEscherichia coliGene ExpressionHigh-Throughput Nucleotide SequencingNADNucleotidesPromoter Regions, GeneticRNA CapsTranscription, GeneticTranscription Initiation SiteTranscriptomeDNA-Directed RNA PolymerasesEndoribonucleasesmRNA decapping enzymesNADNucleotidesRNA Capsnicotinamide adenine dinucleotidenon-canonical initiating nucleotideNudCRai1RNA cappingRNA polymeraseRNA-seqtranscriptiontranscription initiationtranscription start site
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.