Evidence map›Paper›PMID 29680877›Full record

ArticlePlant molecular biology2018

Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions.

V C Dilukshi Fernando, Wesam Al Khateeb, Mark F Belmonte, Dana F Schroeder

Abstract read
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In one paragraph

Article in Plant molecular biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
13.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. International journal of molecular sciences · 2024
    Article
  5. Review
  6. The unequal functional redundancy of ArabidopsisFrontiers in plant science · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

V C Dilukshi FernandoDepartment of Biological Sciences, University of Manitoba, Winnipeg, MB, R3T 2N2, Canada.
Wesam Al KhateebDepartment of Biological Sciences, Yarmouk University, Irbid, Jordan.
Mark F BelmonteDepartment of Biological Sciences, University of Manitoba, Winnipeg, MB, R3T 2N2, Canada.
Dana F SchroederDepartment of Biological Sciences, University of Manitoba, Winnipeg, MB, R3T 2N2, Canada. Dana.Schroeder@umanitoba.ca.
University of Manitoba · CAYarmouk University · JO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageArabidopsis det1 mutants exhibit salt and osmotic stress resistant germination. This phenotype requires HY5, ABF1, ABF3, and ABF4. While DE-ETIOLATED 1 (DET1) is well known as a negative regulator of light development, here we describe how det1 mutants also exhibit altered responses to salt and osmotic stress, specifically salt and mannitol resistant germination. LONG HYPOCOTYL 5 (HY5) positively regulates both light and abscisic acid (ABA) signalling. We found that hy5 suppressed the det1 salt and mannitol resistant germination phenotype, thus, det1 stress resistant germination requires HY5. We then queried publically available microarray datasets to identify genes downstream of HY5 that were differentially expressed in det1 mutants. Our analysis revealed that ABA regulated genes, including ABA RESPONSIVE ELEMENT BINDING FACTOR 3 (ABF3), are downregulated in det1 seedlings. We found that ABF3 is induced by salt in wildtype seeds, while homologues ABF4 and ABF1 are repressed, and all three genes are underexpressed in det1 seeds. We then investigated the role of ABF3, ABF4, and ABF1 in det1 phenotypes. Double mutant analysis showed that abf3, abf4, and abf1 all suppress the det1 salt/osmotic stress resistant germination phenotype. In addition, abf1 suppressed det1 rapid water loss and open stomata phenotypes. Thus interactions between ABF genes contribute to det1 salt/osmotic stress response phenotypes.

Indexed as

ArabidopsisArabidopsis ProteinsBasic-Leucine Zipper Transcription FactorsGerminationIntracellular Signaling Peptides and ProteinsMutationNuclear ProteinsOsmotic PressureStress, PhysiologicalABF1 protein, ArabidopsisABF3 protein, ArabidopsisABI5 protein, ArabidopsisArabidopsis ProteinsAREB2 protein, ArabidopsisBasic-Leucine Zipper Transcription FactorsDET1 protein, ArabidopsisHY5 protein, ArabidopsisIntracellular Signaling Peptides and ProteinsNuclear ProteinsABF3/4/1ABI5DET1HY5Osmotic stressSalt stress

Identifiers

PMID29680877
OpenAlexW2801000367

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.