Evidence map›Paper›PMID 29679388›Full record

ArticleAnnals of neurology2018

Somatic SLC35A2 variants in the brain are associated with intractable neocortical epilepsy.

Melodie R Winawer, Nicole G Griffin, Jorge Samanamud, Evan H Baugh, Dinesh Rathakrishnan, Senthilmurugan Ramalingam, David Zagzag, Catherine A Schevon, Patricia Dugan, Manu Hegde and 24 more

Open access · greenAbstract read
In one paragraph

Article in Annals of neurology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
11.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed, 134 citations in OpenAlex.

  1. Review
  2. Article
  3. Deep tissue sequencing improves genetic diagnostic yield in focal cortical dysplasia.Progress in neuro-psychopharmacology & biological psychiatry · 2026
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  5. Article
  6. Disrupted O-GalNAc glycosylation as a mechanism and biomarker ofbioRxiv : the preprint server for biology · 2026
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  7. Review
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  10. Review
  11. Early death and neuronal abnormalities inbioRxiv : the preprint server for biology · 2025
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  12. Article
  13. International journal of molecular sciences · 2025
    Review
  14. Article
  15. Article
  16. Somatic Mosaicism in Brain Disorders.Annual review of pathology · 2025
    Review
  17. Review
  18. Review
  19. Article
  20. Article

17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors at 11 institutions in 1 country.

Melodie R WinawerGertrude H. Sergievsky Center, Columbia University, New York, NY.
Nicole G GriffinInstitute for Genomic Medicine, Columbia University, New York, NY.
Jorge SamanamudDepartment of Neurosurgery, Columbia University, New York Presbyterian Hospital, New York, NY.
Evan H BaughInstitute for Genomic Medicine, Columbia University, New York, NY.
Dinesh RathakrishnanGertrude H. Sergievsky Center, Columbia University, New York, NY.
Senthilmurugan RamalingamDepartment of Neurology, University of Maryland, School of Medicine, Baltimore, MD.
David ZagzagDepartment of Pathology, New York University Langone Medical Center, New York, NY.
Catherine A SchevonDepartment of Neurology, Columbia University, New York, NY.
Patricia DuganDepartment of Neurology, New York University Langone Medical Center, New York, NY.
Manu HegdeDepartment of Neurology, University of California, San Francisco, San Francisco, CA.
Sameer A ShethDepartment of Neurological Surgery, Columbia University, New York, NY.
Guy M McKhannDepartment of Neurological Surgery, Columbia University, New York, NY.
Werner K DoyleDepartment of Neurosurgery, New York University Langone Medical Center, New York, NY.
Gerald A GrantDepartment of Neurosurgery, Lucile Packard Children's Hospital at Stanford, Stanford, CA.
Brenda E PorterDepartment of Neurology, Lucile Packard Children's Hospital at Stanford, Stanford, CA.
Mohamad A MikatiDivision of Pediatric Neurology, Duke University Medical Center, Durham, NC.
Carrie R MuhDepartment of Neurosurgery, Duke University Medical Center, Durham, NC.
Colin D MaloneInstitute for Genomic Medicine, Columbia University, New York, NY.
Ann Marie R BerginDepartment of Neurology, Harvard Medical School, Boston, MA.
Jurriaan M PetersDepartment of Neurology, Harvard Medical School, Boston, MA.
Danielle K McBrianDivision of Pediatric Neurology, Columbia University, New York, NY.
Alison M PackDepartment of Neurology, Columbia University, New York, NY.
Cigdem I AkmanDivision of Pediatric Neurology, Columbia University, New York, NY.
Christopher M LaCoursiereEpilepsy Genetics Program, Department of Neurology, Boston Children's Hospital, Boston, MA.
Katherine M KeeverDepartment of Neurology, Translational Neuroscience Center, Boston Children's Hospital, Harvard Medical School, Boston, MA.
Joseph R MadsenDepartment of Neurosurgery, Boston Children's Hospital and Department of Neurosurgery, Harvard Medical School, Boston, MA.
Edward YangDepartment of Radiology, Boston Children's Hospital and Department of Radiology, Harvard Medical School, Boston, MA.
Hart G W LidovDepartment of Pathology, Boston Children's Hospital and Department of Pathology, Harvard Medical School, Boston, MA.
Catherine ShainEpilepsy Genetics Program, Department of Neurology, Boston Children's Hospital, Boston, MA.
Andrew S AllenDepartment of Biostatistics and Bioinformatics, Duke University, Durham, NC.
Peter D CanollDepartment of Pathology and Cell Biology, Columbia University, New York, NY.
Peter B CrinoDepartment of Neurology, University of Maryland, School of Medicine, Baltimore, MD.
Annapurna H PoduriDepartment of Neurology, Harvard Medical School, Boston, MA.
Erin L HeinzenInstitute for Genomic Medicine, Columbia University, New York, NY.ORCID 0000-0002-7268-8559
Boston Children's Hospital · USColumbia University · USCenter for Health and Gender Equity · USNYU Langone Health · USDuke University · USLucile Packard Children's Hospital · USNeurological Surgery · USUniversity of Maryland, Baltimore · USDuke Medical Center · USNewYork–Presbyterian Hospital · USUniversity of California, San Francisco · US

Funding

Viral Sequencing CoreU19AI067854 · NIAID · DUKE UNIVERSITY · PI BHARDWAJ, NINA · 2006 to 2011
$290.5M
Virus biology scientific research support componentUM1AI100645 · NIAID · DUKE UNIVERSITY · PI HAYNES, BARTON F. · 2012 to 2018
$204.7M
Harvard Clinical and Translational Science CenterUL1TR001102 · NCATS · HARVARD MEDICAL SCHOOL · PI NADLER, LEE MARSHALL · 2013 to 2017
$106.2M
Clinical and Translational Science AwardUL1TR001873 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI REILLY, MUREDACH P · 2016 to 2025
$99.0M
Satellite Diagnostic and Treatment Clinic CoreP50AG008702 · NIA · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI DE JAGER, PHILIP L · 1989 to 2019
$46.3M
The Epilepsy Phenome/ Genome Project (EPGP)U01NS053998 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LOWENSTEIN, DANIEL H · 2007 to 2013
$26.4M
Clinical and Translational Science AwardUL1TR000040 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GINSBERG, HENRY N · 2012 to 2015
$26.2M
SYNAPTIC MECHANISMS IN HIPPOCAMPAL EPILEPTOGENESISP30HD018655 · NICHD · CHILDREN'S HOSPITAL BOSTON · PI POMEROY, SCOTT LOREN · 1985 to 2015
$26.2M
VASCULAR FACTORS AND MILD COGNITIVE IMPAIRMENT AND ALZHEIMER'S DISEASEP01AG007232 · NIA · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI DEVANAND, DAVANGERE P · 1989 to 2008
$21.7M
The North American Mitochondrial Disease Consortium (NAMDC)U54NS078059 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HIRANO, MICHIO · 2011 to 2023
$17.5M
Yale Center for Mendelian GenomicsUM1HG006504 · NHGRI · YALE UNIVERSITY · PI GERSTEIN, MARK BENDER, GUNEL, MURAT · 2016 to 2020
$14.8M
An integrated and diverse genomic medicine program for undiagnosed diseasesU01HG007672 · NHGRI · DUKE UNIVERSITY · PI SHASHI, VANDANA · 2014 to 2022
$13.4M
NCATS NIH HHS UL1 TR000040NCATS NIH HHS UL1 TR001102NCATS NIH HHS UL1 TR001873NHGRI NIH HHS U01 HG007672NHGRI NIH HHS UM1 HG006504NIAID NIH HHS R56 AI098588NIAID NIH HHS U19 AI067854NIAID NIH HHS UM1 AI100645NIA NIH HHS P01 AG007232NIA NIH HHS P30 AG028377NIA NIH HHS P50 AG008702NIA NIH HHS R01 AG037212NIA NIH HHS RF1 AG054023NICHD NIH HHS P01 HD080642NICHD NIH HHS P30 HD018655NICHD NIH HHS R01 HD048805NICHD NIH HHS U54 HD090255NIDDK NIH HHS R01 DK080099NIMH NIH HHS K01 MH098126NIMH NIH HHS R01 MH097971NIMH NIH HHS R01 MH099216NIMH NIH HHS RC2 MH089915NINDS NIH HHS R01 NS084142NINDS NIH HHS R01 NS089552NINDS NIH HHS R01 NS094596NINDS NIH HHS R01 NS095368NINDS NIH HHS RC2 NS070344NINDS NIH HHS U01 NS053998NINDS NIH HHS U01 NS077274NINDS NIH HHS U01 NS077276NINDS NIH HHS U01 NS077303NINDS NIH HHS U54 NS078059
6 · The paper itself

Abstract

objectiveSomatic variants are a recognized cause of epilepsy-associated focal malformations of cortical development (MCD). We hypothesized that somatic variants may underlie a wider range of focal epilepsy, including nonlesional focal epilepsy (NLFE). Through genetic analysis of brain tissue, we evaluated the role of somatic variation in focal epilepsy with and without MCD.

methodsWe identified somatic variants through high-depth exome and ultra-high-depth candidate gene sequencing of DNA from epilepsy surgery specimens and leukocytes from 18 individuals with NLFE and 38 with focal MCD.

resultsWe observed somatic variants in 5 cases in SLC35A2, a gene associated with glycosylation defects and rare X-linked epileptic encephalopathies. Nonsynonymous variants in SLC35A2 were detected in resected brain, and absent from leukocytes, in 3 of 18 individuals (17%) with NLFE, 1 female and 2 males, with variant allele frequencies (VAFs) in brain-derived DNA of 2 to 14%. Pathologic evaluation revealed focal cortical dysplasia type Ia (FCD1a) in 2 of the 3 NLFE cases. In the MCD cohort, nonsynonymous variants in SCL35A2 were detected in the brains of 2 males with intractable epilepsy, developmental delay, and magnetic resonance imaging suggesting FCD, with VAFs of 19 to 53%; Evidence for FCD was not observed in either brain tissue specimen.

interpretationWe report somatic variants in SLC35A2 as an explanation for a substantial fraction of NLFE, a largely unexplained condition, as well as focal MCD, previously shown to result from somatic mutation but until now only in PI3K-AKT-mTOR pathway genes. Collectively, our findings suggest a larger role than previously recognized for glycosylation defects in the intractable epilepsies. Ann Neurol 2018.

Indexed as

AdolescentBrainChildDrug Resistant EpilepsyExomeFemaleHumansMaleMalformations of Cortical DevelopmentMonosaccharide Transport ProteinsMutationNeocortexNeuronsPhosphatidylinositol 3-KinasesTOR Serine-Threonine KinasesUDP-Galactose TranslocatorsMonosaccharide Transport ProteinsPhosphatidylinositol 3-KinasesTOR Serine-Threonine KinasesUDP-Galactose Translocators

Identifiers

PMID29679388
PMCPMC6105543
OpenAlexW2801607485

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.