Evidence map›Paper›PMID 29677477›Full record

ReviewAnnual review of immunology2018

Systems Immunology: Learning the Rules of the Immune System.

Alexandra-Chloé Villani, Siranush Sarkizova, Nir Hacohen

Abstract readReview
In one paragraph

Review in Annual review of immunology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Review
  16. Systems-based approaches to study immunometabolism.Cellular & molecular immunology · 2022
    Review
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Alexandra-Chloé VillaniBroad Institute of MIT and Harvard, Cambridge, Massachusetts 02142, USA.
Siranush SarkizovaBroad Institute of MIT and Harvard, Cambridge, Massachusetts 02142, USA.
Nir HacohenBroad Institute of MIT and Harvard, Cambridge, Massachusetts 02142, USA.

Funding

Training Program in Bioinformatics and Integrative GenomicsT32HG002295 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI Peter J Park · 2001 to 2026
$15.8M
Center for Cell CircuitsP50HG006193 · NHGRI · BROAD INSTITUTE, INC. · PI REGEV, AVIV · 2011 to 2015
$15.6M
(PQ3) The role of damaged DNA in inter-individual variation of tumor immunityR01CA208756 · NCI · BROAD INSTITUTE, INC. · PI HACOHEN, NIR · 2016 to 2020
$2.6M
Low-input multiplex isolation and profiling of human immune cell subsets using an integrated microfluidics deviceU24AI118668 · NIAID · BROAD INSTITUTE, INC. · PI HACOHEN, NIR · 2015 to 2019
$2.0M
CIHRNCI NIH HHS R01 CA208756NHGRI NIH HHS P50 HG006193NHGRI NIH HHS T32 HG002295NIAID NIH HHS U24 AI118668
6 · The paper itself

Abstract

Given the many cell types and molecular components of the human immune system, along with vast variations across individuals, how should we go about developing causal and predictive explanations of immunity? A central strategy in human studies is to leverage natural variation to find relationships among variables, including DNA variants, epigenetic states, immune phenotypes, clinical descriptors, and others. Here, we focus on how natural variation is used to find patterns, infer principles, and develop predictive models for two areas: (a) immune cell activation-how single-cell profiling boosts our ability to discover immune cell types and states-and (b) antigen presentation and recognition-how models can be generated to predict presentation of antigens on MHC molecules and their detection by T cell receptors. These are two examples of a shift in how we find the drivers and targets of immunity, especially in the human system in the context of health and disease.

Indexed as

Immune SystemImmunityAnimalsAntigen PresentationBiomarkersDisease SusceptibilityEpitopesGenomicsHost-Pathogen InteractionsHumansLigandsMajor Histocompatibility ComplexPeptidesProtein TransportProteolysisReceptors, Antigen, T-CellBiomarkersEpitopesLigandsPeptidesReceptors, Antigen, T-Cellantigen presentationimmune cell typessingle-cell genomicssingle-cell RNA sequencingsystems immunologyT cell receptor

Identifiers

PMID29677477
PMCPMC6597491

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.