Evidence map›Paper›PMID 29676732›Full record

ArticleeLife2018

Donated chemical probes for open science.

Susanne Müller, Suzanne Ackloo, Cheryl H Arrowsmith, Marcus Bauser, Jeremy L Baryza, Julian Blagg, Jark Böttcher, Chas Bountra, Peter J Brown, Mark E Bunnage and 43 more

Abstract read
In one paragraph

Article in eLife, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. A Hybrid Experimental and in silico Platform for ITPK1 Chemical Probe Discovery.SLAS discovery : advancing life sciences R & D · 2026
    Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Probe my Pathway (PmP): a portal to explore the chemical coverage of the human Reactome.Database : the journal of biological databases and curation · 2024
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Communities in structural biology.Nature structural & molecular biology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

53 authors.

Susanne MüllerStructural Genomics Consortium, Buchmann Institute for Molecular Life Sciences, Goethe University Frankfurt, Frankfurt am Main, Germany.ORCID 0000-0003-2402-4157
Suzanne AcklooStructural Genomics Consortium, University of Toronto, Toronto, Canada.
Cheryl H ArrowsmithDepartment of Medical Biophysics, University of Toronto, Toronto, Canada.
Marcus BauserDrug Discovery Pharmaceuticals, Bayer AG, Berlin, Germany.
Jeremy L BaryzaVertex Pharmaceuticals, Boston, United States.
Julian BlaggCancer Research UK Cancer Therapeutics Unit, The Institute of Cancer Research, London, United Kingdom.
Jark BöttcherDiscovery Research, Boehringer Ingelheim, Vienna, Austria.
Chas BountraStructural Genomics Consortium, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
Peter J BrownStructural Genomics Consortium, University of Toronto, Toronto, Canada.
Mark E BunnageVertex Pharmaceuticals, Boston, United States.
Adrian J CarterDiscovery Research, Boehringer Ingelheim, Ingelheim am Rhein, Germany.
David DamerellStructural Genomics Consortium, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
Volker DötschInstitute of Biophysical Chemistry, Goethe-University, Frankfurt am Main, Germany.ORCID 0000-0001-5720-212X
David H DrewryStructural Genomics Consortium, UNC Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, Chapel Hill, United States.
Aled M EdwardsStructural Genomics Consortium, University of Toronto, Toronto, Canada.
James EdwardsJanssen Pharmaceutical Research and Development LLC, Spring House, United States.
Jon M ElkinsStructural Genomics Consortium, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.ORCID 0000-0003-2858-8929
Christian FischerMerck & Co., Inc., Boston, United States.
Stephen V FryeCenter for Integrative Chemical Biology and Drug Discovery, Division of Chemical Biology and Medicinal Chemistry, UNC Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, Chapel Hill, United States.
Andreas GollnerDiscovery Research, Boehringer Ingelheim, Biberach an der Riss, Germany.
Charles E GrimshawChed Grimshaw Consulting, LLC, Poway, United States.ORCID 0000-0002-2897-3483
Adriaan IJzermanDivision of Medicinal Chemistry, Leiden University, Leiden, Netherlands.
Thomas HankeStructural Genomics Consortium, Buchmann Institute for Molecular Life Sciences, Goethe University Frankfurt, Frankfurt am Main, Germany.ORCID 0000-0001-7202-9468
Ingo V HartungDrug Discovery Pharmaceuticals, Bayer AG, Berlin, Germany.
Steve HitchcockTakeda California Inc., San Diego, United States.
Trevor HoweJ&J Innovation Centre, London, United Kingdom.
Terry V HughesJ&J Innovation Centre, London, United Kingdom.
Stefan LauferDepartment of Pharmaceutical Chemistry, Eberhard Karls Universität Tübingen, Tübingen, Germany.
Volkhart Mj LiDrug Discovery Pharmaceuticals, Bayer AG, Wuppertal, Germany.
Spiros LirasWorldwide Medicinal Chemistry, Pfizer, Cambridge, United States.
Brian D MarsdenStructural Genomics Consortium, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
Hisanori MatsuiTakeda Pharmaceutical Company Ltd, Fujisawa, Japan.
John MathiasWorldwide Medicinal Chemistry, Pfizer, Cambridge, United States.
Ronan C O'HaganMerck & Co., Inc., Boston, United States.
Dafydd R OwenWorldwide Medicinal Chemistry, Pfizer, Cambridge, United States.
Vineet PandeDiscovery Sciences, Janssen-Pharmaceutical Companies of Johnson & Johnson, Beerse, Belgium.
Daniel RauhFakultät für Chemie und Chemische Biologie, Technische Universität Dortmund, Dortmund, Germany.
Saul H RosenbergAbbVie, North Chicago, United States.
Bryan L RothThe National Institute of Mental Health Psychoactive Active Drug Screening Program, University of North Carolina Chapel Hill School of Medicine, Chapel Hill, United States.
Natalie S SchneiderStructural Genomics Consortium, Buchmann Institute for Molecular Life Sciences, Goethe University Frankfurt, Frankfurt am Main, Germany.
Cora ScholtenDrug Discovery Pharmaceuticals, Bayer AG, Berlin, Germany.
Kumar Singh SaikatenduTakeda California Inc., San Diego, United States.
Anton SimeonovNational Center for Advancing Translational Sciences, National Institutes of Health, Bethesda, United States.
Masayuki TakizawaTakeda Pharmaceutical Company Ltd., Fujisawa, Japan.
Chris TseAbbVie, North Chicago, United States.
Paul R ThompsonDepartment of Biochemistry and Pharmacology, University of Massachusetts Medical School, Worcester, United States.
Daniel K TreiberEurofins DiscoverX, Sane Diego, United States.
Amélia Yi VianaDiscovery Research, Boehringer Ingelheim, Ingelheim am Rhein, Germany.
Carrow I WellsStructural Genomics Consortium, UNC Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, Chapel Hill, United States.
Timothy M WillsonStructural Genomics Consortium, UNC Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, Chapel Hill, United States.
William J ZuercherStructural Genomics Consortium, UNC Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, Chapel Hill, United States.
Stefan KnappStructural Genomics Consortium, Buchmann Institute for Molecular Life Sciences, Goethe University Frankfurt, Frankfurt am Main, Germany.
Anke Mueller-FahrnowDrug Discovery Pharmaceuticals, Bayer AG, Berlin, Germany.

Funding

Provision of Inactive Analogs to Enable the Most Optimal Use of High-quality Small Molecule Pharmacological ToolsZIATR000372 · NCATS · NATIONAL CENTER FOR ADVANCING TRANSLATIONAL SCIENCES · PI SIMEONOV, ANTON · 2018 to 2019
$238k
Cancer Research UK 11566Cancer Research UK 22897Wellcome Trust 106169/ZZ14/Z
6 · The paper itself

Abstract

Potent, selective and broadly characterized small molecule modulators of protein function (chemical probes) are powerful research reagents. The pharmaceutical industry has generated many high-quality chemical probes and several of these have been made available to academia. However, probe-associated data and control compounds, such as inactive structurally related molecules and their associated data, are generally not accessible. The lack of data and guidance makes it difficult for researchers to decide which chemical tools to choose. Several pharmaceutical companies (AbbVie, Bayer, Boehringer Ingelheim, Janssen, MSD, Pfizer, and Takeda) have therefore entered into a pre-competitive collaboration to make available a large number of innovative high-quality probes, including all probe-associated data, control compounds and recommendations on use (<ext-link ext-link-type="uri" xlink:href="https://openscienceprobes.sgc-frankfurt.de">https://openscienceprobes.sgc-frankfurt.de</ext-link><ext-link ext-link-type="uri" xlink:href="https://openscienceprobes.sgc-frankfurt.de/">/</ext-link>). Here we describe the chemical tools and target-related knowledge that have been made available, and encourage others to join the project.

Indexed as

Molecular ProbesPharmacologyProteinsTechnology, PharmaceuticalMolecular ProbesProteinsbiochemistrychemical biologyChemical probesOpen ScienceTarget validation

Identifiers

PMID29676732
PMCPMC5910019

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.