Evidence map›Paper›PMID 29676145›Full record

ArticleEnvironmental science & technology2018

Identifying and Quantifying the Intermediate Processes during Nitrate-Dependent Iron(II) Oxidation.

James Jamieson, Henning Prommer, Anna H Kaksonen, Jing Sun, Adam J Siade, Anna Yusov, Benjamin Bostick

Open access · greenAbstract read
In one paragraph

Article in Environmental science & technology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 137 citations in OpenAlex.

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  14. Effectiveness of Exogenous FeInternational journal of environmental research and public health · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

James JamiesonSchool of Earth Sciences , University of Western Australia , Crawley , Western Australia 6009 , Australia.
Henning PrommerSchool of Earth Sciences , University of Western Australia , Crawley , Western Australia 6009 , Australia.ORCID 0000-0002-8669-8184
Anna H KaksonenCSIRO Land and Water , Private Bag No. 5 , Wembley , Western Australia 6913 , Australia.
Jing SunSchool of Earth Sciences , University of Western Australia , Crawley , Western Australia 6009 , Australia.ORCID 0000-0002-0129-5184
Adam J SiadeSchool of Earth Sciences , University of Western Australia , Crawley , Western Australia 6009 , Australia.
Anna YusovDepartment of Chemistry , Barnard College , 3009 Broadway , New York , New York 10027 , United States.
Benjamin BostickLamont-Doherty Earth Observatory , PO Box 1000, 61 Route 9W , Palisades , New York 10964 , United States.ORCID 0000-0002-7513-6469
The University of Western Australia · AUBarnard College · USLamont-Doherty Earth Observatory · US

Funding

Training CoreP42ES010349 · NIEHS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI NAVAS-ACIEN, ANA · 2000 to 2020
$53.6M
NIEHS NIH HHS P42 ES010349
6 · The paper itself

Abstract

Microbially driven nitrate-dependent iron (Fe) oxidation (NDFO) in subsurface environments has been intensively studied. However, the extent to which Fe(II) oxidation is biologically catalyzed remains unclear because no neutrophilic iron-oxidizing and nitrate reducing autotroph has been isolated to confirm the existence of an enzymatic pathway. While mixotrophic NDFO bacteria have been isolated, understanding the process is complicated by simultaneous abiotic oxidation due to nitrite produced during denitrification. In this study, the relative contributions of biotic and abiotic processes during NDFO were quantified through the compilation and model-based interpretation of previously published experimental data. The kinetics of chemical denitrification by Fe(II) (chemodenitrification) were assessed, and compelling evidence was found for the importance of organic ligands, specifically exopolymeric substances secreted by bacteria, in enhancing abiotic oxidation of Fe(II). However, nitrite alone could not explain the observed magnitude of Fe(II) oxidation, with 60-75% of overall Fe(II) oxidation attributed to an enzymatic pathway for investigated strains: Acidovorax ( A.) strain BoFeN1, 2AN, A. ebreus strain TPSY, Paracoccus denitrificans Pd 1222, and Pseudogulbenkiania sp. strain 2002. By rigorously quantifying the intermediate processes, this study eliminated the potential for abiotic Fe(II) oxidation to be exclusively responsible for NDFO and verified the key contribution from an additional, biological Fe(II) oxidation process catalyzed by NDFO bacteria.

Indexed as

Ferrous CompoundsIronNitratesNitritesOxidation-ReductionFerrous CompoundsIronNitratesNitrites

Identifiers

PMID29676145
PMCPMC6427828
OpenAlexW2801832056

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.