ArticleFunctional & integrative genomics2018
Systematic analysis and comparison of the PHD-Finger gene family in Chinese pear (Pyrus bretschneideri) and its role in fruit development.
Article in Functional & integrative genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed, 41 citations in OpenAlex.
- Article
- The BNB-GLID module regulates germline fate determination in Marchantia polymorpha.The Plant cell · 2024Article
- Genome-Wide Identification and Expression Analysis of the PHD Finger Gene Family in Pea (Plants (Basel, Switzerland) · 2024Article
- Transcriptome wide identification, characterization and expression analysis of PHD gene family inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2024Article
- PHD finger proteins function in plant development and abiotic stress responses: an overview.Frontiers in plant science · 2023Review
- Comparative analysis ofFrontiers in plant science · 2023Article
- MS1/MMD1 homologues in the moss Physcomitrium patens are required for male and female gametogenesis.The New phytologist · 2022Article
- Whole-genome analysis ofPeerJ · 2022Article
- Identification and Transcriptional Analysis of Zinc Finger-Homeodomain (ZF-HD) Family Genes in Cucumber.Biochemical genetics · 2021Article
- Association of gene expression with syringyl to guaiacyl ratio in sugarcane lignin.Plant molecular biology · 2021Article
- Response of phytohormone mediated plant homeodomain (PHD) family to abiotic stress in upland cotton (Gossypium hirsutum spp.).BMC plant biology · 2021Article
- Genome-wide analysis of PHD finger gene family and identification of potential miRNA and their PHD finger gene specific targets inNon-coding RNA research · 2020Article
- Identification of a genomic region controlling thermotolerance at flowering in maize using a combination of whole genomic re-sequencing and bulked segregant analysis.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Genome-wide characterization of the cellulose synthase gene superfamily in Pyrus bretschneideri and reveal its potential role in stone cell formation.Functional & integrative genomics · 2020Article
- Article
- Genome-wide identification and expression analysis of the PHD-finger gene family in Solanum tuberosum.PloS one · 2019Article
- Comparative genomic analysis of thePeerJ · 2019Article
- Article
- Expansion and evolutionary patterns of GDSL-type esterases/lipases in Rosaceae genomes.Functional & integrative genomics · 2018Article
- Comparative and Expression Analysis of Ubiquitin Conjugating Domain-Containing Genes in TwoCells · 2018Article
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Authors and funding
8 authors at 1 institution in 1 country.
Funding
Abstract
PHD-finger proteins, which belongs to the type of zinc finger family, and that play an important role in the regulation of both transcription and the chromatin state in eukaryotes. Currently, PHD-finger proteins have been well studied in animals, while few studies have been carried out on their function in plants. In the present study, 129 non-redundant PHD-finger genes were identified from 5 Rosaceae species (pear, apple, strawberry, mei, and peach); among them, 31 genes were identified in pear. Subsequently, we carried out a bioinformatics analysis of the PHD-finger genes. Thirty-one PbPHD genes were divided into 7 subfamilies based on the phylogenetic analysis, which are consistent with the intron-exon and conserved motif analyses. In addition, we identified five segmental duplication events, implying that the segmental duplications might be a crucial role in the expansion of the PHD-finger gene family in pear. The microsynteny analysis of five Rosaceae species showed that there were independent duplication events in addition to the genome-wide duplication of the pear genome. Subsequently, ten expressed PHD-finger genes of pear fruit were identified using qRT-PCR, and one of these genes, PbPHD10, was identified as an important candidate gene for the regulation of lignin synthesis. Our research provides useful information for the further analysis of the function of PHD-finger gene family in pear.
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